Aliivibrio fischeri ES114: VF_0582
Help
Entry
VF_0582 CDS
T00236
Symbol
recB
Name
(GenBank) exonuclease V (RecBCD complex), beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vfi
Aliivibrio fischeri ES114
Pathway
vfi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VF_0582 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vfi03400
]
VF_0582 (recB)
Enzymes [BR:
vfi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VF_0582 (recB)
DNA repair and recombination proteins [BR:
vfi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VF_0582 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_11
AAA_25
SLFN-g3_helicase
AAA_30
AAA_12
ResIII
PI-PLC-C1
DUF6022
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
AAW85077
UniProt:
Q5E7B9
LinkDB
All DBs
Position
I:636815..640441
Genome browser
AA seq
1208 aa
AA seq
DB search
MTTIAAPNQLNAMTFPLHGTRLIEASAGTGKTFTIASLYLRLLLGHGDEGTRHQEELTVD
RILVVTFTEAATAELRERIRAKIHDARLAFARAVHNNGYKSGDPVIDPLLASIGDHKSAA
QILLNAERSMDEASIFTIHGFCQRMLTQNAFESGAQFESEFVTDQAKLMHQVAADFWRRS
FYHLPKMVAESVYDCWSSPSALLGDMGNSLTGVPKHLTVEPLENSLEEFCQQGIARIDEL
KKQWSEHCADFEALIAGSGVDKRSYTKKNLPNWLEQVSSWANNPTTSLQVHDKLEKFSQE
LLIEKTKKGEAPEHAVFKLIDDFLAQSLEIKQPLLSLAIHRCRKTLQQAKEQKNWLSFDD
LLTQLSQATENQDNALLLEKIREQYPVALIDEFQDTDPLQYSIFSTLYQDQPQCGLFMIG
DPKQAIYAFRGADIFTYIQARRQVVDHYTLDTNWRSTADMVSSVNRIFEHGKQPFLYDDD
IPFYPVKYNPVNAEQKSWALDNHTQPAMTFWLQESKDGNPVNKTSYQRVMAESTAAQIQT
ILTGAQQGSAYLQNGEKKQAIKAGDIAVLVRTGKEGKLVREALSKQGIASVYLSNRDSVF
SSPLAKDVLRLLQAAMTPTDARAVRSALASSLFAYTADQLHQFNVDEMQWEQAVNEFRAY
RKHWQQRGIMPMLHQIITQQGISERLLAENGGERQLTDLLHIGELLQQTSQTLDSDYGLL
RWLSDSISEPNGDSEEQTVRLESERNLVQIVTIHKSKGLEYDLVFLPFVCLYRAVDKKGE
VSFYDEDNRYSVLDLLKEDDSVEKAEKERLAEDLRLIYVALTRAVYACYIGMAPITKGIS
KKPPTGVHLSGLGYLIQQADECNVEELQACLEKLIVGNSPMVIQSPQTIIDELYQEVQDE
HIELYANKLIEPVKSNWWMTSYSGLVKQGNHHNDTSLELINLDIDSAEDKDDKELDLEPE
RTIFTFPRGARAGTFLHSLFEEVEFTQPITSEENTQIIIKLLEKENYDAEWLEVVQTMMQ
RVLDCPLDGENLRLASKGPTQRLVEMEFLLPIELLNSSLVNKTIAKHDEVSARAGELGFS
TVSGMLKGFIDLVFEHEGKYYVLDWKSNHLGDSPECYGGESLVEAMRDHRYDFQYQLYAL
ALHRFLKSRIADYDYDTHFGGAYYIFLRGVEETHEGHNANSNGVFYSKPSKALLEELEKL
VDGETVDA
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgacgacaatcgcagctccaaatcaattgaatgcaatgacgtttcctctgcacggaact
cgtctgattgaagcttctgcaggtacaggtaaaacctttaccattgctagtttgtattta
cgtttattacttggtcatggtgatgaaggcactcgacatcaagaagagttaaccgtagat
agaatattggtagtgacgtttacagaagcggcaactgccgagttaagagagcgtattcga
gcaaaaatacatgatgctcgtttagcgtttgctcgtgctgtgcataacaacggttataag
agtggtgatccggttattgatccattgttggcatctattggtgaccataagtcggcggca
cagatccttttgaatgctgaacgcagcatggatgaagcctctatctttaccattcatggt
ttttgtcaacgtatgctaactcaaaatgcctttgagtctggtgcgcaatttgagagtgag
tttgttaccgaccaagcgaaattaatgcatcaagtggcagccgatttttggcgtcgcagt
ttttatcacctacctaaaatggtggctgaaagtgtttatgattgttggtcaagcccatcg
gcattattaggtgatatgggtaatagtcttactggtgtcccaaagcatttaaccgtagag
ccactagaaaattcattagaagagttttgtcagcaaggcattgctcgtattgatgaatta
aaaaaacagtggtcagaacattgcgccgattttgaagcgttaattgcaggctctggtgtt
gataaacgtagctacactaaaaagaatttaccgaattggttagagcaagtttcatcgtgg
gccaataacccaaccacctcattgcaagtgcacgataagctagaaaagttttctcaagaa
ttattaattgaaaaaaccaaaaagggcgaagcgccagaacacgccgtatttaaacttatt
gatgattttctagctcaatcattagagatcaagcagccactactatcattagcgattcat
cgatgtcgtaaaactttacagcaagcgaaagagcaaaaaaattggttatcgtttgatgat
ttgctgactcaattatctcaagcgacagaaaatcaagataacgccttattactagaaaag
atccgtgaacaataccctgtggcgttgatcgatgaattccaagataccgatccgctgcaa
tattcgatttttagtacgctttatcaagatcagccacaatgtggtttatttatgattggc
gacccaaaacaagcgatttacgccttccgtggtgcggatatttttacctatattcaagct
cgtcgccaagtggtggatcattacactttggatactaactggcgctcaacggcggatatg
gtgtcgtcagtgaaccgtatttttgaacatggcaaacagccttttttgtacgatgacgat
attccattttatccggttaaatataaccctgttaatgccgagcaaaaatcatgggcgcta
gataatcacactcagccagccatgacattctggttgcaagagagtaaagatggtaacccg
gtaaataaaaccagttatcagcgtgtgatggcagaatcaacagccgcacaaattcaaacc
attttgacaggggcgcagcaaggctcagcgtatttacaaaacggtgagaaaaaacaagcc
atcaaagcgggtgatattgcggtgctggttcgtactggtaaagaaggtaaattagttcgt
gaagccttatcaaaacaaggtatcgccagtgtttatttatctaaccgtgatagtgtattt
tcttctccattagcgaaagatgtattgcgtttattgcaagcggccatgacgccgacagat
gcaagggcggttcgttcagcgctggcatcgtcattatttgcttatactgcggatcaattg
catcagtttaatgtggatgaaatgcagtgggagcaagcggttaatgagtttcgtgcctac
cgtaagcattggcaacaacgtggcattatgccgatgttgcatcaaatcattactcagcaa
gggatctctgagcgcttactcgcagaaaacggtggtgagcgccaactaactgacttattg
catattggtgaattactgcagcaaactagccaaaccttagacagtgattatggattatta
cgttggttgtctgactctatttctgagcctaatggtgattcagaagagcagacggtacgt
ctagaatcagagcgtaacttggtgcaaattgtcactattcataagtccaaagggttggaa
tatgacttagtctttttgccttttgtttgcttatatcgtgcggtagacaaaaaaggtgaa
gtcagtttttatgatgaagataatcgttactcggtgttggatttattaaaagaagacgat
tccgttgagaaggcagaaaaagagcgtttagctgaagatttacgtttgatttatgtagcg
ctgactcgtgcggtttatgcttgttatatcggcatggcacctatcaccaaaggcatctcg
aaaaagccaccaacgggtgtgcatctatcggggttaggttatctaattcaacaggcagac
gaatgtaatgttgaagagctgcaagcttgtttagaaaagttgattgtaggcaattcgcct
atggtgatccaatcacctcaaaccatcatcgatgagctgtatcaagaggttcaagatgag
catattgaactgtacgctaataagttaattgaacctgtgaaaagtaattggtggatgacc
agttattctggattagtcaaacaaggcaatcaccataatgatacttcattagagcttatt
aatttagatatcgattcagcagaagataaagacgataaagagttggatttagagccagag
cgaaccatctttactttcccacgtggagcgagggcgggtacgtttttacactcattgttt
gaagaggtggaatttactcagcccatcaccagtgaagaaaatacgcaaatcatcattaaa
ttgctagagaaagaaaactacgatgcagaatggctagaggtcgttcaaaccatgatgcaa
cgagtgttagattgtccacttgatggtgagaacttacgtttagcaagtaaaggtccaact
caacgtttggttgaaatggaatttttacttcctattgaattgttaaactcaagtttagtg
aataagaccatagcgaaacatgatgaagtatcagcaagagccggggaattaggtttctct
accgttagcggtatgctcaaaggttttatcgatttagtgtttgagcatgaaggtaaatat
tacgttctcgattggaaatcaaatcatctgggagactccccagaatgttatggtggagaa
tccttagttgaggcgatgcgagatcaccgttatgacttccaataccaattatatgcttta
gcgcttcatcgatttttgaagagccgtattgctgattatgattacgatacccattttggt
ggggcgtattatattttcttacgtggcgttgaagagacacatgaagggcataatgcaaat
tctaacggtgtattttattcaaaaccgagtaaagccttgttagaagagttagagaaattg
gtagatggagaaacagttgatgcttaa
DBGET
integrated database retrieval system
