Aliivibrio fischeri ES114: VF_0799
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Entry
VF_0799 CDS
T00236
Symbol
hupB
Name
(GenBank) HU, DNA-binding transcriptional regulator, beta subunit
KO
K03530
DNA-binding protein HU-beta
Organism
vfi
Aliivibrio fischeri ES114
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vfi03032
]
VF_0799 (hupB)
03036 Chromosome and associated proteins [BR:
vfi03036
]
VF_0799 (hupB)
03400 DNA repair and recombination proteins [BR:
vfi03400
]
VF_0799 (hupB)
DNA replication proteins [BR:
vfi03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
VF_0799 (hupB)
Chromosome and associated proteins [BR:
vfi03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
VF_0799 (hupB)
DNA repair and recombination proteins [BR:
vfi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
VF_0799 (hupB)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
ACP_syn_III_C
DUF7342
HU-DNA_bdg
HU-CCDC81_euk_2
Barstar
MarR
UFL1_C
HU-CCDC81_bac_1
Motif
Other DBs
NCBI-ProteinID:
AAW85294
UniProt:
Q5E6Q2
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Position
I:875875..876171
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AA seq
98 aa
AA seq
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MKILKGNTVNKSQLVDQIAESADISKAAAGRALDALVETVTETLKSGDQVTLVGFGSFVV
RERAARTGRNPKTGEAIEISAAKVPAFKAGKALKDACN
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattttaaaggggaataccgtgaataaatctcaattagttgatcaaattgctgaa
agtgcagatatctcaaaagcagcagcaggccgtgctttagatgcactagttgaaacagta
acagagacgctaaaaagtggcgatcaagtaactcttgttggttttgggtcatttgtagtt
cgtgagcgtgcagctcgcacaggtcgtaacccaaaaactggtgaagcgattgagatttca
gctgcaaaagttcctgcttttaaagcgggtaaagcattaaaagatgcgtgtaactaa
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