Aliivibrio fischeri ES114: VF_1051
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Entry
VF_1051 CDS
T00236
Symbol
topA
Name
(GenBank) DNA topoisomerase I, omega subunit
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vfi
Aliivibrio fischeri ES114
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vfi03032
]
VF_1051 (topA)
03400 DNA repair and recombination proteins [BR:
vfi03400
]
VF_1051 (topA)
Enzymes [BR:
vfi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
VF_1051 (topA)
DNA replication proteins [BR:
vfi03032
]
Prokaryotic type
DNA Topoisomerases
VF_1051 (topA)
DNA repair and recombination proteins [BR:
vfi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
VF_1051 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Zn_ribbon_TFIIB
Bubble
Toprim_2
Zn_ribbon_LysW
Motif
Other DBs
NCBI-ProteinID:
AAW85546
UniProt:
Q5E600
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Position
I:1158157..1160787
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AA seq
876 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPMGSTSTGKKAAASTKGLSVEEK
ARIKKERDKKNLINKMGIDPYNDWAANYQILPGKEKVVAELQKLAESADTVYLATDLDRE
GEAIAWHLREIIGGDDSRFKRVVFNEITKNAIQQAFETPGELSMPGVNAQQARRFLDRVV
GFMASPLLWKKVARGLSAGRVQSVAVKVLVEREREINAFIPEEFWDIHADTLTADKENFR
LQVAQRNGSAFKPLNQADTEAAVSILQNAEYEVCKREDRPTKSKPSAPFITSTLQQAAST
RLGYGVKKTMMLAQRLYEGGYITYMRTDSTNLSKEAVEALREFIGSEYGDSYLPAAPIVY
GSKEGAQEAHEAIRPSSVEVKADDLQGMEADAHKLYNLIWNQFVACQMTPAQYDSTTLSV
KADEFTLKAKGRILKFDGWTRVQRPMGKNEDQLLPAVQLGDKLKLEKLDPKQHFTKPPAR
FTEAALVKELEKKGIGRPSTYASIISTIQDRGYVRIDNRRFYAEKMGEIVTDRLNQSFDD
LMDYDFTARMEGNLDRIAEGEKDWKDVLNTFFQDFTADIAKAELDESEGGMSPNNIVETD
IKCPTCGRNMGIRTASTGVFLGCSGYALPPKERCKTTINLGSEEGIVNVLEEDVETAALR
AKKRCPKCETAMDPYLIDQERKIHVCGNNPNCEGYVVEKGEFQLKGYDGPVVECDKCGSD
MELKNGRFGKYMDCTSETCKNTRKILKNGEVAPPKEDPVHLPELVCEKSDAYFVLRDGAS
GLFLAASTFPKSRETRAPLVEELVRFKDRLSPKFLYLTEAPTHDPDGKPAVVRFSRKTKE
NYVRSEVDGKPTGWTGLYIDGKWAITDKRKKPKAEK
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatctctagttatcgtggagtcaccagccaaagcgaaaaccatcaataaatac
cttggcaaagacttcatcgtaaaatccagtgtaggtcacgtacgtgatttgcctatgggt
tcgacaagcactggtaaaaaggcagcagcgtcgaccaaagggttaagtgttgaagaaaaa
gcacgaattaaaaaagaaagagataaaaagaacctaattaataaaatgggtattgaccca
tacaatgattgggcagctaactaccaaatccttccgggtaaagaaaaagtagtagcagaa
ttacaaaaattagcagaaagcgcagataccgtttatctcgcaaccgatttggaccgtgaa
ggggaagctattgcgtggcaccttcgcgagatcatcggtggtgatgattcacgcttcaaa
cgtgtggtttttaacgaaatcacgaaaaatgcgattcaacaggcattcgaaactccaggt
gaactaagcatgcctggcgtaaatgcacaacaagctcgtcgtttcttagaccgtgttgtt
ggctttatggcatctccattattgtggaagaaagtggctcgtggtttatctgctggccgt
gtgcaatcggtagcagtgaaagtattggtagagcgtgagcgtgaaatcaatgcttttatt
cccgaagagttttgggatattcacgcagacacgttaacagcagataaagaaaacttccgt
ctgcaagtagcacaacgtaacggttcagcatttaagccgcttaatcaagcagatacagaa
gcagctgtaagcattcttcaaaatgcagaatacgaagtgtgtaaacgtgaagatcgccca
acgaaaagtaagccatctgcaccatttattacatcaacactgcaacaggcggcaagtaca
cgtctaggttatggtgttaaaaagacgatgatgttagctcagcgcctctatgagggcggt
tacatcacttatatgcgtactgactcaactaacttaagtaaagaagctgtagaggcgtta
cgtgagtttattggttctgagtatggcgatagctatttaccagcagctcctattgtttat
ggtagcaaagaaggtgctcaagaagcccacgaagcgattcgtccttcaagcgtagaagta
aaagcggacgacctacaaggtatggaagctgatgcgcataaactgtacaacttaatttgg
aatcaattcgtagcatgtcaaatgacacctgcgcaatatgattcaacaacattgagcgta
aaagcagacgaattcacactaaaagctaaaggacgtatcctgaagtttgatggttggacg
cgtgtacagcgcccaatgggtaaaaatgaagatcaactgcttcctgctgtgcaacttggc
gataagctaaagttagaaaaactggatcctaagcagcactttactaagccaccagctcgt
ttcacagaagcggcattagttaaagaactagagaaaaaaggcattggtcgtccatcgact
tacgcatcaattatttcaacgattcaagatcgtggttatgttcgcattgataaccgtcgt
ttctacgctgaaaaaatgggtgaaatcgtaactgatcgtctaaatcaatcatttgatgat
ttaatggattacgactttacagctcgcatggaaggcaatctagatagaattgcagaaggc
gaaaaagattggaaagatgtgcttaatacattcttccaagattttactgcagacattgca
aaagcagagctggatgaatctgaaggcggtatgtctccaaataacatcgttgagacagat
attaaatgtccaacatgtggtcgcaatatgggtatccgtactgcatctacaggtgttttc
cttggttgttcaggttatgcattgccaccaaaagagcgttgtaaaacaaccattaactta
ggtagtgaagagggcattgtaaatgttcttgaagaagacgtagaaacagctgcattacgt
gcgaagaaacgttgtcctaagtgtgaaacggcgatggatccttatctaattgaccaagag
cgtaagattcacgtttgtggtaataacccgaactgtgaaggttatgtggttgaaaagggt
gaattccaacttaaaggatacgatggtcctgttgttgaatgtgacaagtgtggttctgat
atggaactgaaaaacggtcgctttggcaaatacatggactgtacgagtgaaacatgtaaa
aacactcgtaagatcttaaagaatggtgaagttgctccaccaaaagaagatcctgtacat
ctaccagaattagtatgtgaaaaatcagatgcttattttgtattgcgtgatggtgcgtca
ggtctattcttagctgcgagcactttccctaaatcacgtgaaacacgtgcaccattagtg
gaagagttagttcgatttaaggatcgtttgtcgcctaagttcttatacttaacagaagcg
ccaacacatgaccctgatggtaaacctgcggtagttcgttttagtcgtaaaacaaaagag
aactatgttcgttcagaagtggatggcaagccaacaggttggactggtttatatattgat
ggaaagtgggctattaccgataagcgtaagaagccaaaagctgaaaaataa
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