Aliivibrio fischeri ES114: VF_1204
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Entry
VF_1204 CDS
T00236
Symbol
gyrA
Name
(GenBank) DNA gyrase (type II topoisomerase), subunit A
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
vfi
Aliivibrio fischeri ES114
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vfi03032
]
VF_1204 (gyrA)
03400 DNA repair and recombination proteins [BR:
vfi03400
]
VF_1204 (gyrA)
Enzymes [BR:
vfi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
VF_1204 (gyrA)
DNA replication proteins [BR:
vfi03032
]
Prokaryotic type
DNA Topoisomerases
VF_1204 (gyrA)
DNA repair and recombination proteins [BR:
vfi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
VF_1204 (gyrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
Beta-prop_ELP1_1st
THF_DHG_CYH
Motif
Other DBs
NCBI-ProteinID:
AAW85699
UniProt:
Q5E5J7
Structure
PDB
PDBj
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All DBs
Position
I:1340000..1342636
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AA seq
878 aa
AA seq
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MSDLAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWN
KPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM
RYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMAT
NIPPHNLTEVVNGCLAFIENEEITIDELMNYIPGPDFPTAALISGRKGIVDAYKTGRGKV
YMRSKANIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGM
RIVIECKRDAVGEVVLNNLYSLTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREV
VTRRTIFELRKARDRAHILEGLALALANIDEIIELIKNAPTPAEAKEGLISRGWDLGNVA
SMLERAGTDAARPDWLEPEFGIREGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKAL
LDEIAELMHILASTERLMEVIRDELVMVRDMYGDERRTEIGAAIHDIDMEDLITQEDVVV
TLSREGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKAYS
LKVFQLPQASRTARGKPIVNILPLEEGERITAILPVSEYSEDKFIFMATGDGTVKKTSLD
QFAKVRANGLIAVNLREDDSLIGVDITDGSSEIMLFSKAGKVVRFNEEQVRGMGRTASGV
RGMKLSGEDQVVSLIVPSNEGDILTVTQNGYGKRTVLSEYPAKSRATQGVVSIKVSERNG
SVVGAVQAEDGDEFMMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTSENENVVALQRIDE
VEEAEIIEGEEGEVTEATVTTEATDAPQADTDAESTEE
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatcttgctaaagagatcacgcccgtaaatattgaagatgagcttcgaggttct
tacctagactatgcgatgtcagtaatcgttggtcgtgctcttcccgatgtgcgtgatggc
ctaaaaccagtacaccgccgcgttttattcgcaatggatgtactaggtaatgattggaat
aaaccatataaaaaatctgcccgtgttgttggcgacgtaatcggtaaatatcaccctcac
ggtgatagtgctgtttatgacaccatcgtacgtatggcgcagccgttctcactacgctat
atgcttgttgatggccaaggtaacttcggttctatcgatggtgactcagcggcggcgatg
cgttataccgaagttcgtatggcgaaaatcgctcacgaattattggctgatctagacaaa
gaaactgtagattatgttcctaactatgatggtacagaacagatccctgcagtattacca
acaaagatcccgaacctacttgtaaatggttcatcaggtatcgccgttggtatggcaaca
aacatcccaccacacaacttaacagaagtggtaaatggttgtttggctttcatcgaaaat
gaagaaatcacgatcgatgagctaatgaactacattccaggtcctgacttcccgacagct
gcattgatcagtggtcgtaaaggcatcgttgatgcttataagacaggtcgtggtaaagtt
tacatgcgttctaaagctaatatcgaagctgacaagaatggtaaagaaaccattattgtt
acagagatcccttatcaagttaacaaagctcgcctgatcgaaaagatcgctgaactagtt
aaagataagaaagtagaaggcatttctgcactacgtgacgaatctgataaagatggtatg
cgtattgttattgaatgtaagcgtgatgcagtaggtgaggttgttcttaataacctttac
tctctgactcaacttcaaactacattcggtatcaacatggttgcactagataatggccaa
ccaaaacttttcaacttgaaagaaatgttgaagtgtttcgttgatcaccgtcgtgaagtg
gtaactcgccgtactatttttgaattacgcaaagcgcgtgatcgtgctcatatccttgaa
ggtttagcactagcattagcgaacatcgatgaaatcatcgaattgatcaagaatgcacca
acaccagcagaagcaaaagaaggtctaatctcacgtggttgggatttaggtaacgttgct
tcgatgctagagcgtgctggtactgatgctgctcgtcctgattggttagagccagagttt
ggtattcgtgaaggtaaatacttcttaacagaacaacaagctcaagcaatcctagaactt
cgtctacaccgtttaactggtttagagcacgagaagatcttagatgaatacaaagcacta
ttagatgaaatcgcagagctaatgcatattcttgcaagcactgaacgtctgatggaagtg
atccgtgacgaattagttatggttcgtgacatgtacggtgatgagcgtcgcactgaaatc
ggtgctgcaatccatgacatcgacatggaagacttaatcacacaagaagatgttgtagta
acactttctcgtgaaggttatgttaagtaccaaattctgagcgattacgaagcacaacgt
cgtggtggtaaaggtaagagtgcaactaagatgaaagatgaagatttcatcgaacgtcta
cttgttgcgaatactcatgataatatcctttgtttctctacacgtggtaaagcgtatagc
ttgaaagtattccaattacctcaagcaagtcgtactgctcgtggtaagccaatcgtaaac
attcttcctctagaagaaggtgagcgtattacagcgattctaccagtatctgaatattct
gaagataagtttatctttatggcaacaggtgatggtactgttaagaaaacatcactagat
caatttgcaaaagttcgtgcaaacggcttaatcgcagtaaatctacgtgaagatgattca
ctaatcggtgttgatatcactgatggttcaagtgaaatcatgctgttctctaaagctggt
aaagtggttcgtttcaacgaagaacaagttcgtggtatgggccgtacagcttctggtgtt
cgtggtatgaaactgtctggtgaagatcaggttgtttcgttaatcgttccttctaatgaa
ggcgatatcttaacagtgactcaaaatggttacggtaaacgtactgttctttctgagtat
cctgcgaagagccgtgcaacgcaaggtgttgtatctatcaaagtttctgaacgtaacggc
agtgttgttggtgcagttcaagctgaagatggcgatgaattcatgatgatcactgacgca
ggtacgctagtacgtactcgtgtatcagaagttagccaagtgggtcgtaatactcaaggt
gtaacattgatccgtacttctgaaaatgaaaatgtagttgcactgcaacgcattgatgaa
gttgaagaagcagaaatcattgaaggtgaagagggtgaagtaacagaggcaacagtaaca
actgaagcgactgatgcacctcaagctgatactgacgctgagagcacagaagaataa
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