Aliivibrio fischeri ES114: VF_1500
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Entry
VF_1500 CDS
T00236
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vfi
Aliivibrio fischeri ES114
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vfi03019
]
VF_1500
Enzymes [BR:
vfi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VF_1500
Messenger RNA biogenesis [BR:
vfi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
VF_1500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
NACHT
nSTAND3
ResIII
T2SSE
SLFN-g3_helicase
Helicase_RecD
PhoH
ABC_tran
AAA_30
TsaE
Zeta_toxin
AAA_23
LacY_symp
Motif
Other DBs
NCBI-ProteinID:
AAW85995
UniProt:
Q5E4Q1
LinkDB
All DBs
Position
I:complement(1658410..1662249)
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AA seq
1279 aa
AA seq
DB search
MMRDRFRLSKRIQGASRIKKEESRHAVFDEIALDIAQSMQTANNRETDRPTISYPEQLPV
SQKKDEIAEAIKNNQVVIVAGETGSGKTTQLPKICLELGRGKFGNIGHTQPRRLAARSVA
DRIAEEMETELGSHVGYKVRFNDQVSDRTQVKLMTDGILLAEIQNDRYLNQYDTLIIDEA
HERSLNIDFIMGYLRELLPKRPDLKVIITSATIDPERFSKHFNNAPMIEVSGRTYPVETR
YRPIVEDGDDTDRDQLEGIFDAVDELCEEGLGDILIFMTGEREIRDTAEALEKRNLRDTE
IVPLYARLSAQEQNRVFQPHAGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTK
VQRLPIEAISQASANQRKGRCGRVSEGICIRLYSEEDFISRPEFTDPEILRTNLASVILQ
MTALGLGDIQAFPFVEAPDNRNIQDGIKLLEELGAINSNAKDPKKSLTKVGRELARLPID
PRLARMVLEAPKYNALQEVMIIAAALSIQDPRERPSDKKQQSDDKHKRFNHEDSDFLTFV
NVWEHVKAKQKELSSNQFRKQCRKDFLNYLRVREWQDVHYQLSQVMKELNYKVNQEAAGY
QGVHTAILAGMLSHIGQKDQEKNEYQGARNARFHIFPASGLFKKQPKWVMVAELVETSKL
WGRIVAKIQPEWIEPLAGHLIKRSYSEPHWSKKSAAVMAYEKVTIYGIPIVPKRQINYGA
IDAPVCREIFIRSALVEGDWHTKHQFFKQNRKLLQEVEELEHKSRRRDILVDDDQLAEFY
DQRVGVDVVSGRHFDTWWKKAQKETPELLNFEKEMLFRGDASHVTDLDYPNFWHQGNLKL
KLSYQFEPGQDSDGVTVHVPLPILNQVEPYGFDWQIPGLRHELVMALIKSLPKTVRKNFV
PAPNYADAFLSRAVPFEAPLLDSLEKELRRMTGFEVFRDDWKLEQIPDHLKVTYRVVDHR
NRKLKESRDLYELKEGLKDKVQETLSQVADDDIEQKGLKTWSFGELPTLYKQKRGGFEVK
AYPAIVDGKDSVEIKLFETEEEQHNAMKAGQRRLILLNVPSPIKYLHDNLPNKSKLGLYF
NQYGRVMDLIDDCIACGIDKLIDEQGGLVWQPEAFEKMKEHIRAELGDTVVEIAKQVETI
LTTAFQIQKKLKGRVDLSMAFALSDIKAQIENLIFKGFATECGWKRLQDIHRYMKAIERR
MEKLPIDPNRDRMHLLKVEGITSDYKELLNKIPKGQPIPDKVKEIRWMIEELRVSYFAQQ
LGTPYPVSDKRVKNAIADC
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
atgatgcgtgatcgttttcgcctaagtaaacgcattcaaggcgcatctcgaatcaaaaaa
gaagaatcaagacacgccgtgtttgatgaaattgcattagatatcgcacaatcaatgcaa
acggcgaataatcgtgaaactgatcgtccgacgatttcttacccagaacaactacctgtt
agccagaaaaaagatgaaattgcagaagcaatcaaaaataaccaagtggttatcgttgct
ggtgaaaccggttcaggtaaaaccacgcagttacctaaaatctgtttagaactaggtcgc
ggtaagtttggtaatattggtcatacgcaacctcgtcgtttagcggctcgttcagtagca
gatcgtattgctgaagagatggagacagaactaggtagccatgttggttataaagttcgt
tttaatgatcaagtctctgaccgtacacaagttaaattaatgacggatggtatcttactg
gctgagatccagaatgaccgttacttaaatcaatatgacacattaattatcgatgaagcg
cacgaacgcagcttaaacatcgattttattatgggttatttacgtgagttattaccaaag
cgtcctgatttaaaagtcattatcacgtcagcaactatcgatcctgagcgtttctcaaaa
cacttcaataatgcaccaatgattgaagtatctggtcgtacttatccggttgaaactcgt
tatcgtccaattgttgaagatggtgatgataccgatcgtgaccaattagaaggtatcttt
gatgcagtagatgaactgtgtgaagaagggctgggtgacattctgatctttatgacgggt
gaacgagaaattcgtgataccgcagaagcattagaaaaacgtaatctacgtgatacggaa
attgtaccgttatacgcacgtttatctgcacaagagcagaatcgtgtcttccaaccacac
gctggtcgtcgaattgtattagccactaacgtagcagaaacatctcttactgttccggga
atcaaatacgttatagatccaggtactgcacgtattagtcgctatagctatcgcaccaaa
gtacaacgtttaccaatcgaagcgatttcacaagccagtgcaaatcagcgtaaaggtcgt
tgtggtcgtgtatctgaaggtatctgtattcgtctttactctgaagaagattttatttct
cgtccagagtttaccgaccctgagatcttacgtactaacctagcgtctgtaattttacag
atgacagcgttagggttaggtgatattcaagccttcccatttgtagaagcccctgataat
cgcaatattcaagatggtatcaagctacttgaagagctaggtgcgattaattcaaatgcg
aaagacccgaagaaaagcttaactaaagttggtcgtgaattagcacgtcttccgattgat
ccacgtttagctagaatggtacttgaagccccgaaatataatgcattacaagaagtgatg
atcattgcagcggcactatcaattcaagacccacgagagcgtccaagcgataagaaacaa
caatctgatgataagcataaacgctttaatcatgaagattcggatttcttaacgtttgtg
aacgtgtgggaacatgtaaaagcaaaacagaaagagctttcaagtaatcaatttagaaag
caatgtcgtaaagactttttgaactatttacgtgtacgtgaatggcaagatgttcactac
caattaagccaagtaatgaaagagcttaattacaaagtgaatcaagaagcggcaggctat
caaggtgttcatactgcaattttagcgggtatgctttctcatattggtcaaaaagaccaa
gaaaagaatgaataccaaggtgcacgtaatgcacgattccacatcttccctgcttctggt
ttattcaagaaacaaccaaaatgggtcatggttgctgaactggttgaaacctcaaaactt
tggggtcgaattgttgcgaaaattcagcctgaatggattgaaccattagcagggcatttg
attaagcgcagttacagtgaaccacattggtcgaagaaatcagcagcagtaatggcttat
gaaaaagtcactatttacggtattccgattgtacctaaacgccaaattaactacggtgcg
attgatgcgcctgtgtgtcgtgaaatttttattcgttcagctctagttgaaggtgattgg
catactaagcatcagttttttaaacaaaaccgtaagttattacaagaagttgaagaactt
gagcataagtctcgtcgtcgcgatattcttgttgatgatgatcagttagctgaattctac
gatcaacgagttggcgtagatgtagtatctggccgtcattttgatacgtggtggaagaaa
gcgcaaaaagagacgccagagttattaaactttgaaaaagaaatgctgttccgtggtgat
gcaagccatgtaacggatttagattatccaaacttctggcatcaaggaaacttaaaacta
aaattaagttaccaatttgagccggggcaagacagcgatggtgtaacggtacatgtacca
ctaccaattttaaaccaagttgaaccttatggctttgattggcagatcccaggtctacgt
cacgaattagtgatggcgttgattaagtcgttacctaaaaccgttcgtaagaatttcgta
ccagcacctaattatgctgatgcatttttatctcgtgctgtaccgttcgaagcgccgtta
ttagacagtttagaaaaagaacttcgtcgaatgacagggtttgaagtgttccgtgacgat
tggaaactagaacagatcccagatcacttaaaagtgacatatcgtgttgttgaccatcgt
aatcgcaagctaaaagaaagccgtgatttgtatgagttaaaagaaggcttaaaagataaa
gttcaagaaacattatcacaagttgcggatgatgatattgagcaaaaaggccttaaaaca
tggagctttggtgagttaccaacgttgtataaacagaaacgtggtggatttgaagttaaa
gcatatccagcgattgttgatggtaaagacagtgtagaaattaaactgtttgaaacagaa
gaagagcagcacaatgcaatgaaggcaggccaacgtcgtctaattcttcttaatgtgcca
tcaccaattaagtatttacatgacaatcttcctaataaatcgaaattaggattgtacttt
aatcagtatggtcgtgtgatggacttgattgatgattgcattgcttgtggtatcgataag
ttaattgatgagcagggtggtcttgtttggcaacctgaagcctttgaaaaaatgaaagaa
catatccgagcagagcttggggatacggttgttgagatcgcaaaacaagttgaaacgatt
ttaactaccgctttccaaattcagaaaaagttaaaagggcgtgttgatttaagcatggcg
tttgcgctttcggatattaaagctcagatagagaatcttatctttaaaggatttgcaacg
gagtgcggttggaagcgtcttcaagatatccaccgttacatgaaagcgattgagcgtcga
atggaaaaactgccgatcgatccaaatcgtgatcgcatgcatttgcttaaagtcgaaggg
atcaccagtgattataaagaattactgaataagataccgaaaggacaaccaattcctgac
aaagtaaaagagatccgttggatgattgaagagttaagagtgagctattttgctcaacaa
ttggggacaccatatccagtttctgataaacgagtcaaaaatgccattgccgattgctaa
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