KEGG   Aliivibrio fischeri ES114: VF_1622
Entry
VF_1622           CDS       T00236                                 
Symbol
helD
Name
(GenBank) DNA helicase IV
  KO
K03658  DNA helicase IV [EC:5.6.2.4]
Organism
vfi  Aliivibrio fischeri ES114
Brite
KEGG Orthology (KO) [BR:vfi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vfi03400]
    VF_1622 (helD)
Enzymes [BR:vfi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     VF_1622 (helD)
DNA repair and recombination proteins [BR:vfi03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    VF_1622 (helD)
SSDB
Motif
Pfam: Helicase_IV_N UvrD-helicase AAA_19 UvrD_C UvrD_C_2 AAA_12 AAA_30 Viral_helicase1 AAA_11 DEAD
Other DBs
NCBI-ProteinID: AAW86117
UniProt: Q5E4C9
LinkDB
Position
I:complement(1819660..1821723)
AA seq 687 aa
MQIKATPFAQWLVQGDFYQLELEQEQLLFTSHKYQVSVPFDKWSGKVTFERGLIWGALCF
YNRNEQVAWRVSGLPWEECDAIINAVLNAYADWKESKVLLLNQLQPQMIELIENFSANKR
FLKQTEALMMVEKLYDLFEQTKISIPLAEQLQPDCIAPVIDWLTEPEEQLKVLNDNWLEE
QKVEWKTFFSECESQPLNESQQSALLLNEDHTLVLAGAGSGKTSVLVARVNYLIQSGQAQ
ADEILLLAFGRQAAQEMSGRIIDKLGFEIGQRVKVATFHQLGLDIIRHVEYQQPKLSCLV
TDVKARKEWFVHVLDSEWKNATAMNRWKKHLKKWPIAYLRGDVDLREESHNEKLQEWLYK
QICQLNSLQLDKKSIVEKIEFHPDVQRLKSELNIVWPFFKAYERTLKHEDAIDYESMITK
AKAYIADNKYELPWSFVMVDEYQDISPQRLDLIEAICHTENKHQTKATLFAVGDDWQAIY
RFAGADVSLTTGFEHRFQSTQIAHLSTTYRFNDQIGAVANRFVQENPMQLKKELNSFTKK
KRKAVKVIEHQSIEKELLSLSKNIRDGEKVVILGRNHNHKPDSFDEWVKFYPGLNLEYNT
CHASKGTEADYVFIVEMTDGQFPMKERAESLDTALLPHAESFPYAEERRLFYVALTRAKK
KVWIVYHGKPSPFVQEIVDKDYPVIIE
NT seq 2064 nt   +upstreamnt  +downstreamnt
atgcagatcaaagcaacccctttcgctcagtggttagttcaaggtgacttttatcaactt
gaattagagcaagagcagctgttgtttacctcacataaatatcaagtatctgttccattt
gataaatggagtggaaaagtgacttttgaaagaggccttatttggggagcgctttgtttt
tataatcgcaatgaacaagtggcatggcgagtatctggacttccatgggaagagtgtgat
gccataattaatgcagtgttaaatgcttatgctgattggaaagaatcaaaagtattgctg
ttaaatcagctgcaaccacagatgattgaattaatcgaaaattttagtgcaaacaagcgc
tttttaaagcaaacagaagctttaatgatggtcgaaaagttatatgatcttttcgagcag
acgaagatttccattcctttagctgaacagcttcaacctgattgtattgcccctgttatt
gattggcttactgagccagaagaacaattaaaagtcttgaatgataattggttagaagag
caaaaagtagaatggaaaacgtttttttctgagtgtgaatcacagccactaaatgaatct
cagcaaagtgctttgctattaaatgaagaccacaccttagttttagctggagcaggctca
ggtaaaacaagtgtattggttgcccgtgtaaattatttaattcaaagtggacaagctcaa
gcagacgaaattttgttattggcttttggtcgtcaagctgcacaagaaatgtcaggtcgt
atcattgataaactcggttttgaaataggtcaacgagtcaaagtcgctacttttcatcaa
ttaggcttagatattattcgtcatgttgaatatcaacaaccaaagctatcatgtttagtt
actgatgttaaagcccgtaaagaatggtttgttcatgttttggattccgaatggaaaaat
gcaacagcgatgaaccgttggaagaagcaccttaagaaatggccaattgcttatttgcgt
ggtgatgtcgatttaagagaagaatcgcacaatgaaaagttacaagaatggctttataaa
caaatttgccaattaaatagtctgcaattagataagaaaagcattgttgaaaagattgag
tttcatcctgatgtgcagcgtttaaaaagtgaattgaatattgtttggccattctttaag
gcgtatgaaagaacgctgaaacatgaagatgctattgattatgaatcaatgattactaag
gctaaagcatacattgctgataacaagtatgaattgccttggtcatttgtaatggttgat
gaatatcaagatatttcaccacaacgtctagatttgattgaagccatttgtcacaccgaa
aataaacatcaaactaaggctacgctatttgctgttggtgatgattggcaagcgatatac
cgttttgctggtgcagatgtgtcgctaactacagggtttgaacatcgttttcaatcgaca
caaattgctcatttatcgacaacgtatcgttttaatgatcaaataggggcggtagcaaat
cgctttgttcaagagaaccctatgcagcttaaaaaagagctaaatagtttcactaaaaag
aaaagaaaggcagtgaaagtaatagagcaccaatctatagaaaaagagctcttatcatta
tctaaaaacattcgtgatggcgaaaaagtcgtgattcttggacgtaaccataatcataag
cccgatagctttgacgagtgggttaagttctatcctggtttgaatttggaatataatacg
tgtcatgctagtaaagggactgaagcagattatgtctttattgtagagatgacggatgga
caattcccgatgaaagagcgggcggagtcattagatacggctttacttcctcatgcagaa
agctttccatatgctgaagagcgacgactattctatgtcgctttaactcgtgcaaagaaa
aaggtatggattgtttatcatggtaaaccatctccatttgtacaagagatcgtggataaa
gattatccagtgataattgaataa

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