Aliivibrio fischeri ES114: VF_1748
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Entry
VF_1748 CDS
T00236
Symbol
rne
Name
(GenBank) rne
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vfi
Aliivibrio fischeri ES114
Pathway
vfi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VF_1748 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vfi03019
]
VF_1748 (rne)
03009 Ribosome biogenesis [BR:
vfi03009
]
VF_1748 (rne)
Enzymes [BR:
vfi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
VF_1748 (rne)
Messenger RNA biogenesis [BR:
vfi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VF_1748 (rne)
Ribosome biogenesis [BR:
vfi03009
]
Prokaryotic type
rRNA processing factors
VF_1748 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AAW86243
UniProt:
Q5E403
LinkDB
All DBs
Position
I:1970213..1973197
Genome browser
AA seq
994 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGKITRIEPSLEAAFVDY
GADRHGFLPLKEIAKEYFPQGYTYQGRPNIKDVLKEGQEVIVQVEKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGEERTQLKAALSTLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWEAVKHASESNQAPFLIHQESNVIVRAIRDYLRRDIGEILIDSPKIFDRA
RQHIQLIRPDFLSRVKLYEGEVPLFSHYQIESQIESAFEREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMREAVRMDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLAL
SVLRLIEEESLKDNTTQVLAVVPVSIASYLLNEKRRSVQHIEKFHDVRVIIVPNSDMETP
HFEVIRIRDGEEQEMLSYLLPKKLEALREAESKEAPVVNIAPKKREEPVLQGFSAPTQAA
PVAKAQPEKKAEAKTEEKPGIISRFFKAIANFFSAPEVSEKTEKKVEEEKPAQPQRRNQN
RNNDRRRNNENGRNNRNNRRNGNDNRNENRRGKKQDDANATTGKQAKANDNKPTKQPKVR
KEIAEQGLKLAADAQQAPAQNTEKQTEKREKTAQVKQRRQRRQLQKKVRTGKAVEAENDA
VVAAQVEAQQSNTEVNTEKNTERKEGQRRNRRSPRHLRASGQRRRRRDRRPVNPSRLSSG
VASPEMAMGKAYPDFARILEMKQAKQRQQEKFVDNETQAAQDKAPKVNVQIGGVAFPEMA
MGKVLLPYVEASVATIKEAVQAPVVEEVKETTPAPVEVAVTEAPTATPVVNVVAETPVEP
AVAEVNEVAVAEAAVKPVVEVEEVQPVVETKVAPKTQYKGHASSGMTKATGPTEIKEITV
TAAEFRAERFTPKQAGSQTATSQASAAMAKTAAL
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaacccaaaaggaagagttgcgcgtcgcattagttgat
ggccaacgccttttcgatcttgatatcgaaagtcctggtcacgaatctaaaaaagctaat
atttataaaggcaaaatcacacgtatcgaaccaagcttggaagcagcttttgttgattac
ggcgctgatcgccatggtttccttccccttaaggaaatcgcaaaagaatattttccacaa
ggctacacatatcaaggtcgtccaaacattaaggacgttttgaaagaaggccaagaagtt
attgttcaagttgaaaaagaagagcgcggaaacaaaggcgcagctttaacaacgttcata
tctcttgctggtagttaccttgttcttatgccaaacaaccctcgtgcaggcggtatttct
cgtcgtatcgaaggtgaagagcgcactcaattaaaagcagcattaagcacattagaacta
cctcaaggtatgggactaattgtacgtactgcaggtgttggcaaatcagctgaagaactt
gagtgggatttaaatgttctactgaaccactgggaagcggttaaacacgcttctgaatca
aaccaagctccattcctaattcaccaagaaagtaacgtaattgttcgcgcaattcgtgat
tacttacgtcgtgatattggtgaaatcttaattgatagcccgaaaatctttgatcgtgct
cgtcaacatattcaacttattcgtccagatttcttatctcgcgttaagctgtatgaaggc
gaagttcctctgtttagtcactaccaaatcgaaagccaaattgaatcagcatttgagcgt
gaagttcgtcttccatctggtggctctattgttattgacccaacagaagctttaacatca
attgatatcaactctgctcgtgcaacgaaaggtggtgatattgaagaaacggcactaaat
acaaaccttgaagctgctgacgaaatcgcacgtcaattacgtttacgtgacttaggtggt
ttagtagttatcgactttatcgacatgacaccagttcgtcaccaacgtgaagttgaaaac
cgtatgcgtgaagccgttcgtatggatcgtgctcgtgttcaaatcggtcgtatttctcgt
ttcggtcttctagaaatgtctcgccaacgcttaagcccgtctttagcagaagcaagccac
catatttgtcctcgttgtacgggtactggtgtggttcgtgataacgaatctctagctctg
tctgttctacgtttaattgaagaagaatcattaaaagacaatacaacacaagttcttgct
gttgttcctgtttctattgcttcttatttattgaatgaaaaacgacgttcagttcaacac
attgaaaaattccatgatgttcgcgtaattattgttcctaactctgatatggaaacgcct
cactttgaagtgattcgtatccgtgatggtgaagagcaagagatgctgtcttaccttctt
cctaagaagctagaagcgctacgtgaagctgaatcaaaagaagctccagttgtaaatatt
gctcctaagaaacgtgaagaacctgttcttcaaggtttcagtgcaccaactcaggctgcg
ccagttgctaaagcacaaccagagaaaaaagcagaagcaaaaactgaagaaaaacctggc
attattagccgtttcttcaaagcaattgctaacttcttctcagctcctgaagtatcagag
aaaactgaaaagaaagttgaagaagagaaaccagctcaacctcaacgtcgtaatcaaaat
cgcaataatgaccgtcgccgtaataacgaaaatggtcgtaataaccgcaacaatcgtcgt
aatggtaacgataaccgtaacgaaaaccgtcgtggtaaaaagcaagacgatgcgaatgca
acaacaggcaagcaagctaaagcaaatgataataagccaactaaacagcctaaagtacgc
aaagaaattgcagaacaaggtcttaaattagcggctgatgctcaacaagctcctgcacaa
aacactgaaaagcaaactgaaaaacgtgaaaaaacggctcaagtaaaacagcgtcgtcaa
cgtcgtcaattgcagaaaaaagtacgtacaggtaaagcggttgaagctgaaaatgatgca
gttgtagcagcacaagttgaagctcaacaatcaaacactgaagtaaatactgagaaaaac
actgagcgtaaagaaggccaacgtcgtaaccgtcgttcacctcgtcaccttcgtgcaagc
ggtcaacgtcgccgtcgtcgcgatcgtcgccctgtaaacccttctcgtttatcttctggt
gttgcatcacctgaaatggcaatgggcaaagcttatcctgatttcgcgcgtattctggaa
atgaagcaagcgaaacaacgccaacaagagaaattcgtagataacgaaactcaagcggct
caagataaagcaccaaaagttaacgttcaaatcggtggcgttgctttccctgaaatggct
atgggtaaagtattacttccttatgttgaagcatctgttgctacgattaaagaagcggta
caagcacctgttgttgaagaagtgaaagagacaactccagcaccagttgaagttgctgtg
actgaagctccaactgctactcctgtagtaaacgtcgtagcagaaacacctgttgaacca
gcggtagcagaagtaaatgaagttgctgttgctgaagctgctgtaaaacccgttgttgaa
gttgaagaagtacaacctgttgttgaaactaaggttgctccaaaaactcaatacaaggga
catgcttcttctggtatgacaaaagcaacaggtccaacagagattaaagaaatcactgtg
actgctgctgagttcagagcagaacgctttactccaaaacaagcgggtagccaaacagcc
acatctcaagcaagtgctgcgatggcaaaaactgccgctttataa
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