Aliivibrio fischeri ES114: VF_1758
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Entry
VF_1758 CDS
T00236
Symbol
ihfB
Name
(GenBank) integration host factor (IHF), DNA-binding protein, beta subunit
KO
K05788
integration host factor subunit beta
Organism
vfi
Aliivibrio fischeri ES114
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vfi03032
]
VF_1758 (ihfB)
03036 Chromosome and associated proteins [BR:
vfi03036
]
VF_1758 (ihfB)
03400 DNA repair and recombination proteins [BR:
vfi03400
]
VF_1758 (ihfB)
DNA replication proteins [BR:
vfi03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
VF_1758 (ihfB)
Chromosome and associated proteins [BR:
vfi03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
VF_1758 (ihfB)
DNA repair and recombination proteins [BR:
vfi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
VF_1758 (ihfB)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
Cac1_C
HU-CCDC81_euk_2
HU-CCDC81_euk_1
DUF348
Motif
Other DBs
NCBI-ProteinID:
AAW86253
UniProt:
Q5E3Z3
LinkDB
All DBs
Position
I:complement(1984560..1984841)
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AA seq
93 aa
AA seq
DB search
MTKSELIEQLCSKKPQLSAKQVEDTVKEILEQMATTLEGGDRIEIRGFGSFSLHYREPRL
GRNPKTGDKVELDGKFVPHFKPGKELRERVNYS
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatctgaactgattgaacaactgtgtagtaaaaagcctcaactttctgctaag
caggtggaagatacagtcaaggaaatccttgagcagatggcaacaacgctagaaggcggt
gatcgtatagagattcgtggttttggtagtttttctctacactatcgagagccacgttta
ggtcgtaatcctaaaactggtgataaggtagagctggacggtaagttcgttccacacttt
aaaccaggtaaagaactgcgtgaacgtgtgaattatagctaa
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