Aliivibrio fischeri ES114: VF_1935
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Entry
VF_1935 CDS
T00236
Symbol
dnaQ
Name
(GenBank) DNA polymerase III epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
vfi
Aliivibrio fischeri ES114
Pathway
vfi03030
DNA replication
vfi03430
Mismatch repair
vfi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VF_1935 (dnaQ)
03430 Mismatch repair
VF_1935 (dnaQ)
03440 Homologous recombination
VF_1935 (dnaQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vfi03032
]
VF_1935 (dnaQ)
03400 DNA repair and recombination proteins [BR:
vfi03400
]
VF_1935 (dnaQ)
Enzymes [BR:
vfi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VF_1935 (dnaQ)
DNA replication proteins [BR:
vfi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VF_1935 (dnaQ)
DNA repair and recombination proteins [BR:
vfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VF_1935 (dnaQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AAW86430
UniProt:
Q5E3G6
LinkDB
All DBs
Position
I:complement(2164972..2165703)
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AA seq
243 aa
AA seq
DB search
MNASNNSSNRIIVLDTETTGMNFSGGPVYEGHRIVEIGAVEIINRKLTGNHFHVYIKPDR
LIDLEAIDVHGITDEFLYDKPEYKDIHDEFLEFIKGAELVAHNAPFDVGFMDYEFSKLNK
LIGTTDQYCKITDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYL
LMTGGQTSLSFSSGENSSDSDEETIKRLNSGRKGLKVLRATADELEAHEKRLDIVGDACL
WRS
NT seq
732 nt
NT seq
+upstream
nt +downstream
nt
atgaatgctagcaacaattcttcgaatcgaattatagttctcgatacagaaaccacaggt
atgaacttctctggtggtcctgtttatgaaggtcaccgtatcgttgagatcggtgccgta
gagatcattaaccgtaaattaaccggtaatcacttccatgtgtacattaagccagatcga
ttaatcgatttagaagcgattgatgttcacggtattactgatgaattcctatatgataaa
cctgaatataaagacatccatgatgaattccttgagttcattaaaggggctgagttagtt
gctcacaacgcgcccttcgatgttggctttatggattatgaattcagtaaactcaataag
ttaattggtaccacggatcagtattgtaaaattaccgataccttggccatggcgaaaaag
atatttccaggtaaacgtaataacctagatgtcttgtgtgaacgctatggtattgataac
tcacaccgtactctccacggcgccttgctcgatgccgagatcttagctgatgtttacctg
ttaatgaccggtgggcagacaagtttgagcttttcatctggagagaattcatctgattca
gacgaagaaaccattaaaagactgaattcaggtagaaaaggattaaaggttttacgtgca
acggccgatgaattagaagcgcatgaaaagcgtttggatattgttggtgatgcctgtttg
tggcgtagttag
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