Aliivibrio fischeri ES114: VF_1947
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Entry
VF_1947 CDS
T00236
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vfi
Aliivibrio fischeri ES114
Pathway
vfi03030
DNA replication
vfi03430
Mismatch repair
vfi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VF_1947 (dnaE)
03430 Mismatch repair
VF_1947 (dnaE)
03440 Homologous recombination
VF_1947 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vfi03032
]
VF_1947 (dnaE)
03400 DNA repair and recombination proteins [BR:
vfi03400
]
VF_1947 (dnaE)
Enzymes [BR:
vfi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VF_1947 (dnaE)
DNA replication proteins [BR:
vfi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VF_1947 (dnaE)
DNA repair and recombination proteins [BR:
vfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VF_1947 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AAW86442
UniProt:
Q5E3F4
LinkDB
All DBs
Position
I:complement(2174355..2177834)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSEPKFVHLRVHSDFSMVDGLSKVPPLVKKVGELGMPAMALTDFTNLCGLVKYYFAAHGA
GVKPIIGADFKVQSQEFGNELFNLTVLAKNNEGYKNLTLLISEAYQRGHVQHTPVMDKEW
LVNHKEGLILLSGGKSGDVGKALLKGNKELVNECVEFYQMHFPEHYYLELTRTGRADEES
YLHFAVELAEKENLPVVATNDVRFIKADDFDAHEIRVAIHDGFTLEDPRRPKLYSDQQYL
RSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPTEGMKIEDFLVKKSQEGL
ERRLAFLFPDEKVRLERRPEYDDRLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP
GRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDKRDQVIEHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPSDPGMTLAKAFEAEPQ
LPELYNADEEVKALIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPLYCDADGHFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPVRIESISLEDQASFNLL
QNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREE
VSYPDATWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPEEM
AKQRGTFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTDKIIGLVDECFRMKLTVLPPDVNSGLYRFNVDEKGAIVYGIGAIKG
VGEGPIENIIEARNKGGHFRDLFDFCARIDTKKTNKRVVEKLIRAGALDRLGPHRAALMA
SLDDAMKAAGQHHQAESFGQSDMFGVLTQAPEEVEQAYIHVPKWPEKVWLEGERETLGLY
LTGHPVNAYIKELSRYTTWRLNDAHVTRRDQTVTVAGLVIAARVMTTKRGTRIGLMTLDD
RSGRMEVMLFSDALDRYADLLETDKIVLVSGQVSFDDFNGGLKMSAREVMSLGDAREKYA
RGLSVSVTESQINNQFFERFSQILEPNRAGTVPVNVYYQRADARVKLVLGTEWRVTPTDQ
LMDDLKSLLGEQQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacctaaattcgtacatttaagagttcatagtgacttctcaatggtggatggc
ttatctaaagtaccaccattggtaaaaaaagtcggtgaacttggtatgcctgcaatggca
ttgactgactttaccaatttatgtggtttagttaagtattattttgctgctcatggcgca
ggagtcaaaccgattattggtgctgactttaaagttcaatcccaagagtttggcaatgag
ctttttaatttaacggtacttgcaaaaaataatgaaggttataaaaacctgactttatta
atctctgaagcctatcaacgaggtcatgttcagcacactccggtaatggacaaagagtgg
ttggttaaccataaagaagggttaatcctgctttctggtggcaaaagtggtgatgttggt
aaagcgttattaaaaggaaataaagaactcgttaatgagtgtgttgaattttatcaaatg
cattttcctgaacattattatttagaattaacgcgtacaggtcgagcagatgaagaaagc
tatcttcattttgcggttgaattagctgaaaaagaaaacttacctgttgttgcaaccaat
gatgttcgttttataaaggccgatgattttgatgctcatgagattcgtgttgcgattcat
gatggctttacattagaagaccctcgtcgacctaaattatacagtgatcaacaatactta
cgttctgaagaggaaatgtgtgaattattttcagatattccagaggcactagagaacagt
gttgaaatagcaaagcgttgtaatgtaaccgtacgcttaggtgagtatttcctacctaat
ttccctactgaagggatgaaaattgaagactttctcgttaagaaatctcaagaaggctta
gaaagacgtttggcgtttttatttcctgatgagaaagtacgcttagaacgtcgacctgaa
tacgatgaccgtttacagattgaactcgatgtaatcaaccaaatgggattccctggttat
ttcttgatcgtaatggagttcattcaatggtcaaaagataatgcaattcctgtaggccca
ggacgtggttcaggtgcaggttctcttgttgcttatgcattagatattacagaccttgat
cctcttgaatacgatcttctttttgaacgtttcttgaacccagaacgtgtatctatgccc
gatttcgatatcgacttttgtatggataaacgagatcaggttattgagcacgtagccgaa
atgtatggccgtgatgcggtatctcaaattattacctttggtaccatggcggcaaaagcg
gtaattcgtgatgtagggcgagtgcttgggcacccttacggttttgttgaccgtatttcg
aagttagttccatctgatcctggaatgacactagctaaagcatttgaagccgagcctcaa
cttccagagctgtataatgcagatgaagaagtaaaagctctgatcgacatgtgtcgtatt
cttgaaggttgtactcgaaacgcaggtaagcacgccggtggtgttgtaatatcaccaact
acaatcacagactttgctcctttgtattgtgatgctgatggccatttccctgtaactcaa
tttgataaaaatgacgttgaaactgctggtctagttaagtttgacttcttagggttaaga
acgctaactatcatagattgggcattagggctaattaaccctcgacttgaaagagagggt
aaagagccagttcgaattgaatccatttctctcgaagatcaagcatcatttaatttatta
caaaattcagaaactaccgcggtattccagttggaatctcgaggtatgaaagatctgatt
aaacgtcttcaaccggactgttttgaagatatcatcgcactggtagctcttttccgtcct
ggtccgcttcaatcaggcatggtagataacttcattgaccgtaaacatggtcgagaagaa
gtatcttaccctgatgcaacatggcagcacgaatcgttaaaagagacgttagaacctact
tacggcattatcttgtatcaagaacaagttatgcagattgcacagatcttagcgggttat
acgctaggtggcgcggatatgcttcgtcgtgcaatgggtaagaaaaaaccagaagaaatg
gccaagcagcgtggtacttttaaagaaggtgctgagaaaaacggtgttgatggcgaattg
tcgatgaaaatcttcgacttagtagaaaaattcgcaggctatggttttaacaaatctcac
tcagcggcttatgctttagtttcttatcaaacattatggttaaaaacacattatccagca
gagtttatggctgcggtaatgacggcggatatggataacacggataagatcattggtctt
gttgatgagtgtttccgtatgaaattaaccgtgttaccaccggatgttaactctggtttg
tatcgttttaacgttgatgagaaaggcgcgattgtttacggcattggtgcgattaaaggg
gttggtgaaggcccaattgaaaatattattgaagcaagaaacaaaggtggtcactttaga
gacttatttgatttctgtgctcgtatcgatactaagaaaaccaataaacgagtagttgaa
aaactgatccgtgctggagcattagatagactaggaccacaccgagctgcattaatggca
tcattggatgatgcgatgaaagcagcgggtcaacaccatcaggcggagtcttttggtcaa
tctgatatgtttggtgtattaactcaagcacctgaagaagtagaacaagcgtatattcat
gtccctaaatggccagagaaagtgtggctagaaggggaaagagaaacattagggctttat
ttaacaggtcaccctgttaatgcgtatattaaagagttgtctcgatatacgacatggcgt
ttgaacgatgctcacgtaactcgacgcgatcaaacggtaacagttgcaggcttagtaata
gctgctagagtaatgaccactaaacgtgggacacgtattggtttaatgacgttagacgac
agatctggccgaatggaagtgatgttgttctcagatgcgcttgatcgatacgcagattta
ctagaaactgataaaatagtccttgtttctggacaggtcagctttgatgatttcaatggt
gggcttaaaatgtctgcccgtgaagtgatgtcattgggcgatgcgcgcgaaaagtacgca
cgtgggttatccgtatcggtaaccgaatctcaaattaataaccaattttttgagcgcttt
agtcaaatactagagcctaaccgggcagggacagttccggtcaacgtatattatcaacga
gcagatgctcgagtgaagttggtcttagggacagaatggcgagtaacgccaaccgaccaa
ctgatggatgatttaaagtcgttgcttggcgaacaacaagtcgagcttgaatttaactag
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