Aliivibrio fischeri ES114: VF_2166
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Entry
VF_2166 CDS
T00236
Symbol
pcnB
Name
(GenBank) poly(A) polymerase I
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
vfi
Aliivibrio fischeri ES114
Pathway
vfi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VF_2166 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vfi03019
]
VF_2166 (pcnB)
Enzymes [BR:
vfi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
VF_2166 (pcnB)
Messenger RNA biogenesis [BR:
vfi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
VF_2166 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
AAW86661
UniProt:
Q5E2T5
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All DBs
Position
I:2436589..2438016
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AA seq
475 aa
AA seq
DB search
MTAHLNIEVIIFNQVARFCRNLLKNNSDICSTEDLKLNVITRQEHNISRKDLSDNALKVL
YRLSNAGYDAYLVGGGVRDILLGQEPKDFDIATNATPEQIKKLFRNCRLIGRRFRLAHIL
FGRDVIEVATFRGHHKEDNEKKNISAQSDEGMLLRDNVYGTVEEDAERRDFTVNAMYYNI
ADYSIHDYANGIEDLKNGIIRLIGDPETRYREDPVRMLRAVRFAAKLDMTICDKTAAPIA
ELSPLLRDIPAARLFEESLKLLQTGNGLNTYWMLRDFNLFQQLFPVLTPFLTEEGNSPAE
QMIELVLRSTDKRINSGKRVNPAFMFAAMLWYPLTAKAQEIQDDNPKFDHYESIMEASNL
ILDTQVRSTAIPRRLTATIRDIWQLQLRLPRRTGKRAFVLIEQQKFRAAYDFLEMRGKVE
GGETKDLCDWWTEFQDAPAPHRNNMVQNLNGGRRSGGPRKRRSPYRKKKRANNDS
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
ttgactgctcacttgaatatcgaggttattatctttaatcaagttgcccgtttttgtcgt
aatttactcaaaaacaacagtgatatttgctcaacagaggatttgaaactgaacgttatc
acacgccaagaacataatatttcacgtaaagatttaagtgataatgcacttaaagttctt
taccgtctaagcaatgctggatatgacgcttatctggtaggcggaggtgtgcgcgatatt
ctattaggtcaagaacctaaagactttgatattgcaaccaatgcaactccagagcaaatc
aaaaaactattcagaaattgtcgtttaattggtcgacgattccgtcttgctcatattctt
tttggtcgagatgttattgaagttgctaccttccgtggccaccacaaagaagataatgag
aaaaagaatatctcagcgcaatctgacgaagggatgctactacgcgataacgtatatggc
acggtagaagaagatgctgaacgtcgtgactttacggttaatgcgatgtactacaatatc
gcagactactcgatacacgattacgccaacggcattgaagatttaaaaaatggcattatc
cgtttaattggtgatcctgaaactcgttatcgcgaagacccagtccgtatgcttcgtgca
gttcgttttgctgcaaaattagatatgactatttgtgataaaacagcagcaccaattgct
gagctttcacctctacttagagacattcctgctgcacgtttatttgaagagtcattaaag
ctactgcaaaccggtaatggattaaatacttactggatgctacgagactttaatcttttc
caacaattgttccctgtactcactcctttcttaacggaagaaggaaatagccctgctgaa
caaatgattgagcttgtattacgctctacagataagcgaattaacagcggtaagcgtgta
aaccctgcgtttatgtttgctgcaatgctttggtatccgttaacggcaaaagcgcaagaa
atccaagatgacaatccaaaatttgatcactacgaatcaataatggaagcatctaattta
attcttgatactcaagtaagaagtactgcgatcccacgtcgcttaactgcaacaattcgt
gatatttggcaacttcaattacgcttacctcgtcgcacgggtaaacgagcttttgtactt
attgagcaacaaaaattccgtgccgcttatgatttcttagaaatgcgtggcaaagttgaa
ggcggcgaaaccaaagatttatgtgactggtggactgagttccaagatgcaccagcacca
catcgtaacaatatggttcaaaatttaaacggtggtcgccgttctggtggtcctcgtaag
cgtcgcagcccatatcgtaagaaaaaaagagcaaataacgactcatga
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