Aliivibrio fischeri ES114: VF_2254
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Entry
VF_2254 CDS
T00236
Symbol
rpoD
Name
(GenBank) RNA polymerase, sigma-70 (sigma-D) factor
KO
K03086
RNA polymerase primary sigma factor
Organism
vfi
Aliivibrio fischeri ES114
Pathway
vfi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
VF_2254 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vfi03021
]
VF_2254 (rpoD)
Transcription machinery [BR:
vfi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VF_2254 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMEM120A-B
Peripla_BP_4
Motif
Other DBs
NCBI-ProteinID:
AAW86749
UniProt:
Q5E2J7
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All DBs
Position
I:2528339..2530180
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AA seq
613 aa
AA seq
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MDQNPQSQLKLLVIKGKEQGYLTYAEVNDHLPEEIVDSEQVEDIIQMINDMGIKVVETAP
DADDMSLNDDDAVTDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEEGINEVQCSVAEFPGAISYLLEQFDKVQTEEIRLTDIISGFVDPNDDGSSAPTA
THIGSELSESELDDEDDEDAEGETEEEEDAGIDPELALEKFTELRTSYHNMQLAFEEFGR
DDAKSREAIGELTDIFREFKLIPKQFDYLVKEMRDGMDRVRTQERLIMRMCVEYGKMPKK
SFIALFTGNESSDEWFNEIMASDKPYVERLQRYEEDIRRSIAKLDSIEKETGLPVENIKD
ISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLP
EELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLELPVDSATSTSL
KFATNDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDE
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaatccgcagtcacagctaaaattacttgtaatcaaaggcaaggaacaaggc
tacctgacctacgcagaagttaacgatcacctaccagaagagattgtcgattctgagcag
gttgaagatattatccaaatgatcaatgacatgggtatcaaagtggtagaaaccgctcct
gatgctgatgacatgtcattaaatgatgatgatgccgtaactgatgaagatgcagcagaa
gccgctgcagcagcactatcaagtgtagaaagtgaaattggccgtacaactgacccagta
cgtatgtacatgcgtgaaatgggcacagttgaacttcttactcgtgaaggcgaaattgac
atcgctaaacgtattgaagaaggtatcaacgaagttcagtgttctgttgctgaattccct
ggcgctatttcatacttactagaacagtttgacaaagtacaaactgaagaaattcgttta
actgacattatttcaggatttgttgatccaaatgatgacggttcgtctgcaccaacagca
actcatatcggttctgaattaagcgaatctgagcttgatgatgaagatgatgaagatgca
gaaggtgaaacggaagaagaagaagatgcaggtatcgaccctgaacttgctctagagaaa
ttcacagagcttcgaacttcttaccacaacatgcaattagcatttgaagaatttggtcgc
gatgatgcaaaatcacgcgaagcgattggtgaattaacggatattttccgtgagtttaaa
ctgatccctaaacaattcgactacctagtaaaagaaatgcgtgatggtatggatcgtgtt
cgtacacaagagcgcctaattatgcgtatgtgtgttgaatacggaaaaatgcctaagaaa
tcattcattgcactgttcacaggtaatgaatcttctgatgagtggttcaatgaaattatg
gcttcagataagccatatgttgagcgtctacaacgttacgaagaagatattcgccgctct
atcgcaaaactagatagcatcgaaaaagaaacaggtttacctgtagagaatattaaagac
atcagccgtcgtatgtctatcggtgaagcaaaagctcgccgtgcgaaaaaagagatggtt
gaagcaaacttacgtcttgtaatctctattgctaaaaaatacacaaaccgtggtcttcaa
ttcctagatcttatccaagagggtaacattggtctaatgaaggcagtagataagtttgaa
taccgccgtggttacaaattctctacttacgctacatggtggatccgtcaagctatcact
cgttcgattgctgaccaagcacgtacgatccgtattccagtacacatgatcgaaacgatc
aataaactgaatcgtatctcgcgtcaaatgctacaagaaatgggccgtgaaccactacct
gaagagcttgctgaacgcatgcaaatgccagaagacaagatccgtaaggttctgaagatc
gctaaagagcctatctcaatggaaacaccaatcggtgatgatgaagattcgcacctaggt
gatttcatcgaggataacacgcttgaactaccagtggactcagctacatcaactagcttg
aagtttgctacaaatgatgttcttgcaggtttaactcctcgtgaagcaaaagtgcttcgt
atgcgttttggtatcgacatgaatactgaccatactctagaagaagtgggtaaacaattt
gatgtaacacgtgagcgtattcgtcaaatcgaagcaaaagcgcttcgtaaactgcgtcac
ccaagtcgttctgaagtattacgtagcttcttagacgaataa
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