Aliivibrio fischeri ES114: VF_2412
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Entry
VF_2412 CDS
T00236
Symbol
rpoC
Name
(GenBank) RNA polymerase, beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vfi
Aliivibrio fischeri ES114
Pathway
vfi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VF_2412 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vfi03021
]
VF_2412 (rpoC)
03400 DNA repair and recombination proteins [BR:
vfi03400
]
VF_2412 (rpoC)
Enzymes [BR:
vfi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VF_2412 (rpoC)
Transcription machinery [BR:
vfi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VF_2412 (rpoC)
DNA repair and recombination proteins [BR:
vfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VF_2412 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AAW86907
UniProt:
Q5E239
LinkDB
All DBs
Position
I:complement(2695759..2699964)
Genome browser
AA seq
1401 aa
AA seq
DB search
MKDLLKFLKAQHKTEEFDAIKIGLASPDQIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFESYVVTEPGMTDLERSQLLSEEEYLDKLEEFGDEFTAKM
GAEAIKDLLASMDMQAEIEDMREELETTNSETKRKKVTKRLKLVEAFVQSGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLEGRGLATTIKAAKKMVEREEAIVWDILDDVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLEGFAEAEKAYRTG
VAELHARVKVRITEVLRDENGIETRETKLVDTTVGRAMLWQIVPEGLPYSIINQKLGKKQ
ISNLLNEAYRTLGLKDTVVFADQIMYTGFAYAALSGASVGIDDMVIPDAKYTKVADAEEE
VKQIQEQYQSGLVTAGERYNKVIDIWAATNEQVAKEMMDNLSSETVLNRDGEEEQQESFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVNQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVHLDDCGTYEGVTMTPLIEGGDVKEPLHERVL
GRVVAEDVLKPGTDEILLPRNTLLDEKQCQIVEENSVDQIKVRSVVSCEADFGCCANCYG
RDLARGHMVNQGESVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAADNSIQVKTTGSIKL
HNAKHVTNGEGNLVITSRASELTVIDEHGRTKESYKLSYGTILTKKDGDAVNQGDKIASW
DPHTMPIITEVQGQVQFVDMIDGVTITTQTDELTGLSSIVVLDAAERASAGKDMRPTVKL
VDANGNDIMIPGTEMPAQYFLPGKAIVNLADGGNVGIGETLARIPQASSGTKDITGGLPR
VADLFEARKPKEPAILAEHAGIVAFGKETKGKVRLLITRDDNGEVYEEMIHKHRQLNIFE
GDKVERGDVISDGPETPHDILRLRGIHAVTEYITNEVQEVYRLQGVKINDKHIETIVRQM
LRKCTITHSGDSTFLEGEQLEFANVTIANRQLEAEGKQPARFERDLLGITKASLATESFI
SAASFQETTRVLTEAAVSGKRDELRGLKENVIVGRLIPAGTGFAYHQERQKQKAVEQEGP
SAEQATDNLAALLNAGFSSEE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcacaacacaagactgaagaatttgatgcaatc
aaaatcggtcttgcttcacctgaccaaattcgttcatggtcttttggtgaagttaaaaag
ccagaaacaatcaactatcgtacctttaagccagaacgtgacggtcttttctgtgcacgt
atctttggcccagttaaagactacgaatgcttatgtggtaaatacaaacgccttaagcac
cgtggtgttatctgtgaaaaatgtggcgtagaagtaacgcaaactaaagttcgtcgtgac
cgtatgggccacatcgaattagcgtctccagttgcgcacatctggttcctgaagtcactg
ccgtctcgtattggtttgttaatggacatcccactacgtgatatcgagcgtgtactttac
tttgaatcatatgtggttactgagccaggtatgactgatctagaacgcagccaacttctt
tctgaagaagaatatcttgataagctagaagagttcggtgacgaattcacagctaagatg
ggtgcggaagcgatcaaagatctgctagcgtctatggacatgcaagcagagatcgaagac
atgcgtgaagagttagaaactactaactctgaaacaaaacgtaaaaaagtaactaagcgt
ctgaaactagtagaagctttcgttcaatctggtaacaacccagagtggatgattcttact
gttctaccagttcttccgccagatcttcgtcctctagtaccactagatggcggtcgtttt
gctacgtctgatctaaatgacttataccgtcgtgtgattaaccgtaacaaccgtttgaag
cgtcttttagacttagctgcaccagacattatcgtacgtaacgaaaaacgtatgcttcaa
gagtctgttgatgcgctgcttgataacggtcgtcgtggtcgtgcgatcacaggttctaac
aaacgtcctcttaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aacttgcttggtaaacgtgtagactactctggtcgttctgtaatcacagtaggtccatac
cttcgtctacatcagtgtggtcttcctaagaagatggcacttgaactatttaaaccattt
atctacagcaagttagaaggtcgtggtcttgctacgacaatcaaagctgctaagaaaatg
gtagagcgcgaggaagcgatcgtttgggatatcctagatgacgtaatccgtgaacaccca
gtactacttaaccgtgcaccgacacttcaccgtctaggtatccaagcgtttgaaccagta
ctaatcgaaggtaaagcgattcagcttcacccactagtgtgtgcggcatataacgccgac
ttcgatggtgaccagatggcggtacacgtaccactaactctggaagctcaattagaagca
cgtaccctaatgatgtcgacaaacaacattctgtcgccagcatcaggtgacccaatcatc
gtaccttctcaggacgttgtattaggtctgtactacatgacacgtgaaaaaattaacgcg
aaaggcgaaggcatgtaccttgaaggttttgctgaagctgaaaaagcataccgtacaggt
gttgcagagctacatgctcgcgttaaagttcgtatcactgaagttcttcgtgatgagaat
ggtattgaaactcgtgaaactaaactggttgatacgactgttggtcgtgcaatgctatgg
caaatcgtgccagaaggtcttccttacagcatcattaaccagaagttaggtaagaagcaa
atctctaacctactaaacgaagcgtaccgtactcttggtcttaaagacactgtagtgttt
gctgaccaaatcatgtacaccggtttcgcatacgcagcattgtctggtgcgtctgttggt
atcgatgacatggttatccctgatgctaagtatacgaaagttgctgatgcagaagaagaa
gttaagcaaattcaagaacagtaccaatctggtcttgtaactgcgggcgaacgttacaac
aaagttatcgatatctgggcggcaacaaacgaacaagttgctaaagagatgatggataac
ctgtcttcagaaacagtgcttaaccgcgatggtgaagaagagcaacaagaatcgtttaac
agcgtttacatgatggccgattccggtgctcgtggttctgcagctcagattcgtcagcta
gctggtatgcgtggtctgatggctaaaccagatggttcaatcatcgaaacaccgatcacg
gcgaacttccgtgaaggtctaaacgtaaaccaatacttcatctcaacgcacggtgcgcgt
aaaggtcttgccgatacagcacttaaaactgcgaactcaggttacctgactcgtcgttta
gtagacgttgcacaagatgtagttgttcacttagatgactgtggtacatacgaaggtgtg
accatgactcctctaattgaaggtggtgacgttaaagaacctctacacgaacgtgttcta
ggtcgtgtggttgctgaagatgtattgaaaccaggtacagatgaaattcttcttccacgt
aacacacttcttgatgagaagcagtgtcaaatcgttgaagaaaactcagttgaccaaatt
aaagtacgttcagtagtaagctgtgaagctgacttcggttgttgtgcaaactgttacggt
cgtgacctagctcgtggtcatatggttaaccaaggtgagtcagttggtgttatcgctgct
caatcaatcggtgaacctggtacacagctaacgatgcgtacgttccacatcggtggtgcg
gcatctacagcggcagcagacaacagcattcaagttaagacgactggttcgatcaaactt
cataatgctaagcacgtaacaaatggcgaaggtaacttagttattacgtctcgtgcttct
gaattaacagttattgatgagcatggccgtacaaaagaaagctacaaactatcttacggt
actatcttaactaagaaagatggtgatgcagttaaccaaggcgacaagatcgcatcttgg
gatccgcatacaatgccaatcatcactgaagtacaaggtcaagttcaattcgttgatatg
attgatggtgttacgatcacaactcaaactgatgagctaactggtctatcttcaatcgtt
gttcttgatgcggctgagcgtgcttctgctggtaaagacatgcgtccaacagtgaaactt
gttgatgcgaatggtaacgacatcatgatccctggtactgaaatgccagctcaatacttc
ctacctggtaaggcgattgttaaccttgctgatggtggtaacgtaggtattggtgaaacg
ttagctcgtattcctcaagcttcaagcggtactaaagatatcaccggtggtctaccacgc
gttgcggacttatttgaagctcgtaagcctaaagagccagcaattcttgctgagcacgca
ggtattgttgcgtttggtaaagagactaaaggtaaggttcgcttattgatcactcgtgac
gataacggcgaagtttatgaagaaatgattcataaacaccgtcaacttaacatctttgaa
ggtgataaagttgaacgtggtgacgttatctctgatggtccagaaactccacatgatatc
ctacgtttacgtggtattcatgcagttactgaatacatcactaacgaagttcaagaagtt
taccgtttacaaggcgttaagattaacgataagcacattgaaactatcgttcgtcaaatg
ctacgtaagtgtacgattacacattctggtgattctactttccttgaaggtgagcaacta
gaattcgctaacgtaacgattgcaaaccgtcagcttgaagctgaaggcaagcaacctgca
cgtttcgagcgtgatctactaggtattactaaagcgtctcttgctactgagtcgttcatc
tctgctgcatcgttccaagaaacgacgcgcgtacttactgaagcagcggtttctggtaag
cgtgatgaactacgtggtctgaaagaaaacgtaatcgttggtcgtctaattccagcgggt
acaggtttcgcataccaccaagaacgtcaaaagcaaaaagctgtggagcaagaaggtcca
tcagctgagcaagcgactgataacttagcggcactattaaatgcaggtttctcttctgaa
gagtaa
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