Aliivibrio fischeri ES114: VF_A0151
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Entry
VF_A0151 CDS
T00236
Symbol
rhlE
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vfi
Aliivibrio fischeri ES114
Pathway
vfi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VF_A0151 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vfi03019
]
VF_A0151 (rhlE)
Enzymes [BR:
vfi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VF_A0151 (rhlE)
Messenger RNA biogenesis [BR:
vfi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VF_A0151 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
CMS1
HI1480
ERCC3_RAD25_C
AAA_22
DsrH
Motif
Other DBs
NCBI-ProteinID:
AAW87221
UniProt:
Q5E175
LinkDB
All DBs
Position
II:166790..168292
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AA seq
500 aa
AA seq
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MGFTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLL
ERLSNGPKRKFNQVRALVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRL
RRGVDVLVATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILAKLPKNRQ
NLLFSATFSDEIRQLAKGLVKDPVEISVAKRNTTAETVEQSVYVMDKGRKPKVLTKLIKD
NDWKQVLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVLVAT
DIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEAKELFAIER
LIQKVLPRHVLEGFEPVNKVPESKLDTRPIKPKKPKKPKAPRVEHKDGQRSGENRNGNKQ
GAKQGQKPATKRTPTNNPSGKKEGTDSDKKKRPFSGKPKTKGTGENRGNGSNFGKSKSTP
KSDVKPRRQGPRPARKPKAN
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgggttttacctctctgggcttatctgcccctattttaaaagctgtagaagaacaaggt
tatagcacgccttcaccaattcaattacaagcaattccagcagtaattgaaggcaaggat
gttatggctgctgcacagacagggacaggtaaaacagcaggtttcacattacctctattg
gagcgtttatcgaacggtccaaagcgtaagtttaatcaagttcgtgcgttagtattaacg
cctacacgtgagttagctgcgcaagtacacgaaagtgttgagaagtatagtaagaaccta
ccactgacttctgatgtggtttttggtggcgtaaaagtgaatccacaaatgcagcgtttg
cgtcgtggtgtggacgttttggtagcaacaccgggtcgtttactggatcttgccaatcaa
aatgcgattaagtttgatcaattagaaattcttgttttggatgaagctgaccgtatgtta
gatatgggctttattcatgatattaaaaaaatcttagctaagcttcctaaaaaccgtcaa
aatttgcttttttctgcaacgttttcagatgagatccgtcaattagcaaaagggctagtg
aaagatcctgttgagatttcagtagctaaacgtaacacaacggctgaaacagtagagcaa
tcagtttatgtaatggataaaggccgtaaacctaaagtacttactaaactgattaaagat
aatgattggaagcaagttttagtctttagtaaaactaagcatggtgcaaaccgtcttgca
aaaacactagaagagaagggtgtaagtgctgcagcaattcatggtaataagagccaaggt
gcgcgtactaaagcattagcaaactttaagagtggtcaagtacgagtacttgtagcgacg
gatattgcagcgcgtggcttggatatcgagcaattgcctcaagttattaacgttgattta
ccaaaagtacctgaagattatgttcaccgtattggtcgtacaggtcgtgctggtgcaacg
ggtaaagccatttcttttgtgagcgaagatgaagcgaaagaattgtttgctattgaacgt
ttgattcaaaaagtactgcctcgccatgtgttagaaggtttcgagccagttaataaagta
ccagaatcaaaactggatactcgcccgatcaaaccgaaaaaacctaagaagccaaaagca
ccaagagttgaacataaagatggtcagcgttcaggtgaaaatcgcaatggcaacaaacaa
ggcgcaaaacaaggtcaaaagccagcgacaaaacgtactcctacaaataatccatcaggt
aaaaaagaaggtacggattcggataaaaaaaagcgtccattttctggtaaacctaaaact
aaaggaactggcgaaaatcgcggtaatggcagtaactttggtaaatcaaaatctactcca
aaatcggatgtaaaaccacgtcgtcaaggtccacgaccagcacgtaaaccaaaagcaaac
tga
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