Aliivibrio fischeri ES114: VF_A0349
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Entry
VF_A0349 CDS
T00236
Name
(GenBank) DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease)
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
vfi
Aliivibrio fischeri ES114
Pathway
vfi03030
DNA replication
vfi03430
Mismatch repair
vfi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VF_A0349
03430 Mismatch repair
VF_A0349
03440 Homologous recombination
VF_A0349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vfi03032
]
VF_A0349
03400 DNA repair and recombination proteins [BR:
vfi03400
]
VF_A0349
Enzymes [BR:
vfi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VF_A0349
DNA replication proteins [BR:
vfi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VF_A0349
DNA repair and recombination proteins [BR:
vfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VF_A0349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AAW87419
UniProt:
Q5E0M7
LinkDB
All DBs
Position
II:complement(389729..390508)
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AA seq
259 aa
AA seq
DB search
MPDKSLKNKNIITHMMDLFSNRHPLHRLEEQRQALIEQNLTLPDYLVCFLKSSYPSPKEN
SNDMAFTVVDFETSGLNPKTDHIVSVGWVHIIDGVIKLSSAQHHIINEPTSISAEDGHEE
REHIARSLHHILPEQQKMGISLEEAMECFFSNLPSNILVVHGATIEQRFLEQFILSLQLP
NLPIIWLDTLRIEQNTIQQNRYQRDFRLFSLRRQYKLPDYPAHHALVDAISTAELFLAQK
KRLFNQAIAPIGFLYQKSQ
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgcctgataaatcattaaagaacaaaaatatcatcactcatatgatggatctattctct
aatcgccatccattgcaccgtttagaagagcagagacaagcattaattgaacaaaattta
acgctacctgattatttagtctgttttcttaaatcatcttatccaagcccgaaagaaaac
agtaatgatatggcgttcaccgttgtggattttgaaacctcagggttaaatccgaaaacc
gatcatatcgtgagcgttggttgggttcacattattgatggcgtaatcaaactcagcagt
gcccagcaccatatcatcaatgaaccaacctcaataagtgcagaggatggacatgaagaa
agagagcatatcgcacgctcattgcatcacattttacctgagcaacaaaaaatggggatt
tcactcgaagaggcaatggaatgtttcttttcaaatttacctagcaatattcttgttgtt
catggagcaactattgagcagcggtttttagagcaatttatcctttctctacaattgcca
aatttacctataatttggctagatacgcttagaattgaacaaaatacaattcaacaaaac
cgttatcaaagagatttccgtttattctcccttagacgtcaatataagctacctgactac
cccgctcatcacgctttagtcgatgctatttcaactgctgagctttttttagctcaaaaa
aaacgtctatttaatcaagctattgcccctattggcttcctatatcaaaaatctcaatag
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