Vibrio fluvialis: AL536_08520
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Entry
AL536_08520 CDS
T04379
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vfl
Vibrio fluvialis
Pathway
vfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL536_08520 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vfl03019
]
AL536_08520 (pnp)
03016 Transfer RNA biogenesis [BR:
vfl03016
]
AL536_08520 (pnp)
Enzymes [BR:
vfl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AL536_08520 (pnp)
Messenger RNA biogenesis [BR:
vfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AL536_08520 (pnp)
Transfer RNA biogenesis [BR:
vfl03016
]
Prokaryotic type
tRNA degradation factors
AL536_08520 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
OB_RRP5_4th
S1_RRP5
KH-I_KHDC4-BBP
KH_2
KH_SLS1_2
Spt6_S1
S1_2
DUF3016
Motif
Other DBs
NCBI-ProteinID:
AMF93579
UniProt:
A0AAX2LKR1
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All DBs
Position
2:198243..200378
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AA seq
711 aa
AA seq
DB search
MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL
TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS
VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHINGQLVLNPSNAELATSKLDLVV
AGTESAVLMVESEAEVLSEEEMLSAVVFGHDQQQTVIKAINEFAAEVATPAWDWEAPAEN
TELKAKIAELAESQLVEAYQITEKMARYDRIHEISAEVSAKLLAEDEELNPKEIHTIFHD
LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ
RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSID
EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEDDFVVLS
DILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ
AISGARDDISQFAPRIHTMKISADKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA
TSGEQAQDAIRRIEQITAEVEVGKIYTGKVARLADFGAFVTVLPGKDGLVHISQIADKRI
EKVSDVLSEGQEVQVKVLEIDRQGRVRLSMKEAVEKPAEEAMAAQDAPEAE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaaaaccagtagtaaaaacattccagtacggtaaccacaccgtgacactggaa
actggcgttatggctcgtcaggcaacggcagctgtaatggtaaccatggacgatacagca
gtattcgtgagcgtggttggtaagaaagaagccgttgaaggccaagatttcttccctctg
acagtaaactaccaagagcgtacctacgctgcaggtaaaatccctggcggcttctttaag
cgtgaaggccgtccttctgaaggcgaaacgctgactgcacgtctgatcgaccgtccaatc
cgcccgctgttcccagatgcatttaaaaacgaagttcaagtgattgcgaccgttgtgtct
gttaacccagacgtgcaacctgacatcgtgaccatgattggtacttctgctgcgctagcg
atctctggtattccgttcaatggtcctatcggtgctgcgcgtgttggtcacatcaacggt
caattggttctgaacccaagcaacgctgagcttgcaacatcgaagcttgaccttgtggtt
gctggtactgaatctgccgttctgatggttgaatctgaagcagaagttctgtctgaggaa
gagatgctgtctgcggttgtatttggtcacgatcaacaacaaaccgtgatcaaagcgatc
aacgaattcgcagcagaagttgcgactcctgcatgggattgggaagcgccagcagaaaac
actgagctgaaagcgaagattgctgagctggctgaaagccaattggttgaagcgtaccaa
atcactgagaaaatggcgcgttatgaccgcatccacgaaatcagtgctgaagtcagcgcg
aagctgctggctgaagacgaagaactgaatccaaaagaaatccacactatcttccatgac
ctggaaaaaactgtggtacgtcgcagcatcatcgctggcaacccacgtatcgatggccgt
gaaaaagacatggttcgtgcactggacgtacgtactggcgttctgccacgtactcacggt
agtgctctgtttactcgtggtgaaactcaggctctggttacggcgactctgggtactcaa
cgtgacgcgcaaatcatcgacgaactgactggcgagaagaaagatcacttcctgctgcac
tacaacttccctccatactgtgtgggcgagacgggttttgtgggttctcctaagcgtcgt
gaaattggtcacggtcgtctggcaaaacgcggtattgctgcggttatgccttctatcgat
gaattcccatatacagtgcgtgtagtatctgaaatcactgaatcaaacggctcgtcttca
atggcgtctgtatgtggctcttcactggctctgatggacgcgggtgtgccaatcaaagca
tcggttgcgggtatcgcaatgggtctggtgaaagaagaagatgacttcgtcgttctgtct
gacattctgggtgacgaagaccacctgggcgacatggactttaaagtagcgggtacttca
aacggtgtgactgcactgcagatggacatcaagattgaaggtattacgaaagagatcatg
cagatcgctctgaaccaggcgaaaggtgcacgtctgcacattctgtctgtaatggatcaa
gctatctctggtgctcgtgacgatatctctcaattcgctccacgtatccacaccatgaag
atcagcgcagacaagatcaaagacgtgatcggtaaaggtggcgcagtgattcgtcagctg
actgaagaaacaggcaccaccattgaaatcgaagatgacggcacgatcaagatcgcggca
acttcaggtgagcaagcgcaagatgcgattcgtcgtatcgagcagatcactgcagaagtt
gaagtgggtaagatctacacgggtaaagtggcacgtctggctgacttcggcgcattcgta
acggtactgcctggtaaagatggtctggtacacatttctcaaatcgctgacaagcgtatc
gagaaagtgtctgacgtactgtctgaaggccaagaagtacaagttaaagttctggaaatc
gaccgtcaaggccgtgtacgtctgagcatgaaagaagcggttgaaaaaccagctgaagaa
gcgatggctgcacaggatgcaccagaagctgaataa
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