Vibrio fluvialis: AL536_11290
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Entry
AL536_11290 CDS
T04379
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vfl
Vibrio fluvialis
Pathway
vfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL536_11290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vfl03019
]
AL536_11290
Enzymes [BR:
vfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AL536_11290
Messenger RNA biogenesis [BR:
vfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AL536_11290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
AAA_22
HI1480
CMS1
Motif
Other DBs
NCBI-ProteinID:
AMF94075
UniProt:
A0AAX2LLM8
LinkDB
All DBs
Position
2:751924..753408
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AA seq
494 aa
AA seq
DB search
MGFTSLGLSAPILQAIKEKGYETPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPIL
ERLSGGPRVRGNQVRALILTPTRELAAQVQECVFTYSRHLPLSSAVVFGGVKINPQMLRL
RKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILELLPKKRQ
NLLFSATFSDEIRALAKGLVNDPVEISVNPANSTAKTVEQCVYPADVKKKAPMLVKLIKD
GNWQQVLVFTRTKRGANKLAAFLNEEGIKAAAIHGNKSQGARTTALAEFKSGELRVLVAT
DIAARGIDIPQLPQVVNFELPNVAEDYVHRIGRTGRAGEAGRAISLVCAVEAPDLFGIER
LIQQVLPRVELEGFKPTNAVPESKLDTRPIKPKKPKKPKKPAVQGEGKAQGDKPAGNGKK
SGQANAGSKSGKPRHGNPQAKKEQPEGAKPKQRNGARSGKAGEQNSGAAKANKPRRYNNG
NGAPRARQTADANR
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgggttttacctcgttaggtctgtctgcaccaatcctccaagctatcaaggaaaaaggc
tacgaaacgccttctccaattcaggcacaagccattcctgctgtgctacaaggcaaggat
gtgatggccgcggctcagacaggtacaggtaaaaccgccggatttaccctgccgattctg
gaacgcctgagcggaggcccgcgtgtacgtggcaaccaggtacgtgccctgatcctgact
ccgacccgtgaactggcggctcaggtacaagagtgcgtgtttacctacagccgtcatctg
ccgctgagcagtgcggtggtgtttggtggcgtgaagataaacccacaaatgctgcgcctg
cgtaaaggggcggatgtactggtagcaacaccgggccgtctgatggatctgtataaccag
aacgcggtcaaatttgaccaactggaagtgctggtgctggacgaagccgaccgcatgctg
gacatgggctttatccgcgatatccgtaagattcttgaactgctgccaaagaaacgtcag
aacctgctgttctcggctaccttctctgatgaaattcgcgcactggcgaaaggtctggtg
aacgatccggtggagatttcggtcaacccggcgaactcgacggcaaaaaccgttgagcag
tgtgtgtatccggcggacgtgaaaaagaaagcaccgatgctggtgaaactgatcaaagac
ggcaactggcaacaagtgctggtgtttacccgcaccaagcgtggcgcgaacaagctggcg
gcgtttttgaatgaagagggcatcaaagctgctgcgattcacggtaacaagagtcagggc
gcacgcacgacggcactggctgaatttaaatccggtgaactgcgtgtactggtggcaact
gatatcgccgcgcgtggcatcgatattccacagcttccacaagtggtgaactttgaactg
ccaaatgtggcggaagactacgtacaccgcattggtcgtacgggccgtgcgggcgaagcg
ggtcgtgccatctcgttggtgtgtgccgttgaagcgccggatctgttcggcattgaacgt
ctgattcagcaagtattgccacgtgtggaactggaaggctttaaaccaaccaacgcagtg
ccggaatctaaactggatactcgtccaatcaaaccgaaaaagccaaagaaaccgaagaag
cctgccgtgcagggtgaaggcaaagcgcaaggcgataagccggcgggcaatggtaaaaaa
tcaggtcaggcaaacgccgggtctaaatcaggtaagccacgccatggcaatcctcaggcg
aagaaagaacagcctgaaggcgcgaaaccaaaacagcgcaacggtgcgcgttcgggcaaa
gcgggtgagcagaactcaggggctgcgaaagcgaacaagccaagacgctacaacaatggc
aatggtgcgccacgcgctcgccaaactgcagacgccaatcgttaa
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