Vibrio fluvialis: AL536_18135
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Entry
AL536_18135 CDS
T04379
Name
(GenBank) RNA polymerase sigma factor RpoS
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
vfl
Vibrio fluvialis
Pathway
vfl05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vfl00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
AL536_18135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vfl03021
]
AL536_18135
Transcription machinery [BR:
vfl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AL536_18135
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AMF95335
UniProt:
A0AAX2LR86
LinkDB
All DBs
Position
2:complement(2278683..2279669)
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AA seq
328 aa
AA seq
DB search
MSISNTATKVEEFDFDPETANLAEVEEELATNNDQSEEIREEFDASTKSLDATQMYLSEI
GFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNL
GLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTAREL
SQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNSD
PEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQI
QVEGLRRLREILMKQGLNMESLFNVEND
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgagtatcagcaatacagccactaaagtcgaagagtttgattttgatcctgaaacagcg
aatcttgctgaggtcgaagaagaacttgctaccaacaatgaccagtcagaagagattcgt
gaagagtttgacgcttcaacgaaaagcctcgatgcaactcagatgtatctgagtgagatt
ggtttctcaccactgttaaccgccgaagaagaagtactctacgctcgccgtgctctgcgt
ggcgatgaagctgcgcgcaaacgcatgattgagagtaacttacgtctggtggtcaagatt
tcccgccgttatagtaatcgtggcctggcactgcttgacctgattgaagagggtaacctc
ggcctgattcgtgcggtagagaaattcgacccagaacgcggtttccgtttttcgacttac
gccacctggtggattcgtcagaccattgaacgtgcgctgatgaaccaaacccgtaccatt
cgtttaccgattcatgtggtgaaagagctgaatatttacctgcgtactgcacgtgaactg
tctcagaaactggaccacgaaccaaccgcagaagaaatagcggttgaactggataagcca
gtggatgacgtcagcaaaatgctgcgcctgaatgagcgcatcagctctgtggacactccg
attggcggtgacggtgataaggcgttgctggatatcattccggacatcaacaactctgat
cctgaagtctccacgcaagatgacgacattcgtgattcgttggtggcttggctggatgag
ctcaatccgaaacagaaagaagtgctggcacgccgctttggcttgttgggctatgaacct
tcgacgctggaagaagtcggccgcgagattaatctgactcgtgaacgtgtacgccaaatt
caggttgaaggtctgcgccgtctgagagagatcctgatgaaacaaggcctgaatatggaa
tcgctgttcaacgtggaaaacgattaa
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