Vibrio fluvialis: AL536_18220
Help
Entry
AL536_18220 CDS
T04379
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
vfl
Vibrio fluvialis
Pathway
vfl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vfl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AL536_18220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vfl03021
]
AL536_18220
Transcription machinery [BR:
vfl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AL536_18220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
ARCH_RTEL1
HAP1_N
TMPIT
Cwf_Cwc_15
Motif
Other DBs
NCBI-ProteinID:
AMF95352
UniProt:
A0AAX2LTR4
LinkDB
All DBs
Position
2:2292095..2293972
Genome browser
AA seq
625 aa
AA seq
DB search
MDQNPQSQLKLLVIKGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAP
DADDLALSDDNTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEEGINQVQSAVAEYPGTIPYILEQFDKVQAEELRLTDLISGFVDPNEEETTAPTA
THIGSELSGADLDDEDEEDIDDEDEDEDEDGDDDSSDSDEEVGIDPELALEKFTELRNKF
QNLQLAINEHGNESSKAQQATDLVLDVFREFRLTPKQFDHLVDTLRTSMDRVRTQERLIM
KAVVEVAKMPKKSFIAIFTGNESSEAWLDQVLASDKPYVEKVRQYEDDIRRSIQKLKIIE
QETSLTVDRIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG
NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISR
QMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTL
ELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIR
QIEAKALRKLRHPSRSETLRSFLDE
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaatccgcagtcacagcttaaactacttgtcattaaaggcaaggaacaaggc
tatctgacctacgccgaagtaaatgaccacctacctgctgagatcgtcgattctgaacag
gtagaagatattattcagatgatcaacgacatgggtatcaaagtagtagaaactgctcct
gatgccgatgacctcgcccttagcgacgacaacacgatcactgatgaagatgcagcagaa
gccgctgcagctgcgctgtcaagtgtagaaagcgagattggtcgaacgaccgatccagtc
cgcatgtacatgcgtgaaatgggtacagtagaactactgactcgtgaaggtgaaatcgat
attgctaagcgtattgaagaaggtatcaaccaagttcaaagcgccgtagctgaatacccg
ggcaccatcccttacattcttgaacagtttgacaaagttcaggccgaagaactgcgcctg
accgatctgatttctggttttgtcgatccaaacgaagaagagaccaccgcaccaacagca
acccacatcggttctgagctaagtggtgcagatctcgacgacgaagatgaagaagacatc
gacgacgaagatgaagacgaagatgaagacggtgatgacgacagcagcgacagcgatgaa
gaagtcggtatcgaccctgagctggcactggaaaaattcaccgagctgcgtaacaagttc
caaaacctgcaactcgcgatcaacgagcacggtaacgaaagctcaaaagcgcagcaggca
acggatctggtactggatgtcttccgtgaattccgtctgacaccaaaacagttcgatcat
ttggttgatacccttcgcacgtcaatggatcgcgttcgtactcaagaacgtctgatcatg
aaagccgtggtcgaagtggcaaaaatgccgaagaaatcgttcatcgctatcttcacgggt
aacgaatcaagcgaagcatggttggatcaggttctggcatcagataagccgtacgtggaa
aaagttcgccagtacgaagatgatattcgccgttctatccagaaactgaagatcatcgaa
caagagacttctctgactgttgatcgtatcaaagacatcagccgtcgcatgtctatcggt
gaagcgaaagctcgccgtgcgaagaaagagatggttgaagcgaacttgcgtctggttatt
tctatcgcgaagaaatacaccaaccgtggcctacaattcctggatctgattcaggaaggt
aacatcggtctgatgaaagcggttgataagtttgaatatcgtcgtggctacaagttctcg
acgtacgcaacttggtggattcgtcaggcgatcactcgctcaatcgcagaccaggcacgc
actatccgtattccggttcacatgatcgaaacgatcaacaaactgaaccgcatctctcgt
cagatgctacaggaaatgggtcgtgagccactgccggaagagttggctgaacgcatgcaa
atgccggaagacaagatccgtaaagtcctgaaaattgccaaagagcctatctcaatggag
acaccaatcggtgacgacgaagattcgcatctgggtgatttcatcgaggataccactctg
gaactaccactggattctgcaacagcaacaagcctgaaagcagcaactcgtgatgttctg
gctggcctgacgcctcgtgaagcgaaagtactgcgtatgcgctttggtatcgacatgaat
accgaccacacgctcgaagaagtgggcaaacagttcgacgtaactcgtgaacgtatccgt
cagatcgaagcaaaagcactgcgcaaactgcgtcatccaagccgctcagagactctgcgc
agcttcctcgacgagtaa
DBGET
integrated database retrieval system
