KEGG   Vibrio fluvialis: AL536_19090
Entry
AL536_19090       CDS       T04379                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
vfl  Vibrio fluvialis
Pathway
vfl02024  Quorum sensing
vfl03018  RNA degradation
vfl05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vfl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AL536_19090
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    AL536_19090
   05111 Biofilm formation - Vibrio cholerae
    AL536_19090
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vfl03019]
    AL536_19090
   03036 Chromosome and associated proteins [BR:vfl03036]
    AL536_19090
Messenger RNA biogenesis [BR:vfl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     AL536_19090
Chromosome and associated proteins [BR:vfl03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    AL536_19090
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AMF95496
UniProt: A0AAX2LRB9
LinkDB
Position
2:complement(2473199..2473462)
AA seq 87 aa
MAKGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILLKNTVNQMVYKHAIS
TVVPARPVSHHSGERPSNDRGAEKSED
NT seq 264 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctctacaagacccattcttaaatgcactacgtcgcgagcgtatt
ccggtttcgatctaccttgtgaacggcattaagctgcaaggccaaattgaatcgtttgat
cagtttgtgatcctattgaagaacactgtgaaccaaatggtttacaagcacgctatctca
accgtggtaccggcgcgtccagttagccaccacagcggcgaacgtccttcgaatgatcgc
ggcgcagagaaatcagaagattaa

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