Vibrio fluvialis: AL536_19830
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Entry
AL536_19830 CDS
T04379
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vfl
Vibrio fluvialis
Pathway
vfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL536_19830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vfl03019
]
AL536_19830
03400 DNA repair and recombination proteins [BR:
vfl03400
]
AL536_19830
Enzymes [BR:
vfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AL536_19830
Messenger RNA biogenesis [BR:
vfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AL536_19830
DNA repair and recombination proteins [BR:
vfl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AL536_19830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AMF95617
UniProt:
A0AAX2LSS2
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All DBs
Position
2:complement(2629676..2631511)
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AA seq
611 aa
AA seq
DB search
MTATLIAEQSDALPDPQTILRDVFGYQTFRDGQQEVIESAVAGRDSLVIMPTGGGKSLCY
QIPALAREGVTVVISPLISLMKDQVDQLKANGVAAECVNSTQSREALIGIYNRMHSGQLK
LLYVSPERVLTGEFIERLHNLPLAMIAVDEAHCISQWGHDFRPEYAALGQLKQQFPQVPI
MALTATADDATRSDILSRLNLTDPHVYLGSFDRPNIRYTLMEKHKPVSQVIRYLDTQKGH
CGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFG
MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAVMLYDPADIAWLRRMLDEKSD
GPQKQVETHKLTAMSNFAEAQTCRRQVLLNYFGEYRDKPCGNCDICLDPPKHFDATEEAR
KALSCVYRVNQSFGIGYVVEVLRGMQNIRIREHGHDKISTYGLGRDHSHDYWVSIFRQLI
HKGMLHQNITRNSTLQLTEEARPLLRGDMSLELAVPRLDTAVRAAKADKLSSKNYDKKLF
AKLRKLRKSIADEEGLPPYVVFSDATLIDMADILPTSYGEMLAVSGVGQRKLEKYADPFL
DLIQEHLTYHG
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgaccgctactttaatcgctgaacaatccgacgcgttgcccgatccgcagaccattctg
cgcgatgtgtttggctaccagacttttcgtgatggtcagcaggaagtgatcgaatcggct
gttgcgggtcgtgattcgctggtgatcatgcccactggcggtggtaaatcgctctgttat
cagattccggcattggcgcgcgaaggcgtgacggtcgtgatttcgccgctgatttcgctg
atgaaagaccaggtcgatcagcttaaagccaacggcgtggcagcggagtgcgtcaactcg
acccagagccgcgaggcgctgattggcatttacaatcgcatgcattccggccaactcaag
ctgctgtatgtgtcgccagagcgcgtgctgaccggcgaatttatcgagcgtttgcacaac
ctgccgctggcgatgattgcggtcgatgaagcgcactgtatttcccagtggggacacgat
ttccgcccggaatacgcggcgcttggccagctcaaacagcagtttccgcaggtgccgatc
atggcactgacggcgaccgccgacgatgccacccgcagcgacattctgtcgcgcctcaac
ctgactgacccgcacgtttatctcggcagctttgaccggccgaacattcgctacacgctg
atggaaaaacacaagccggtgtcgcaggtgattcgttacctcgacacgcaaaaaggccat
tgcggcatcatctactgtggcagccgcaagaaagtggaaatggtgacggaaaaactgtgc
aacaaccacattcgcgccgctggctatcatgccgggatggacgccgatgaacgggcgtat
gtgcaggaagcgtttcagcgcgacgacattcagattgtagtcgccaccgtggcgttcggc
atgggcatcaacaaacccaacgtgcggtttgtggttcactttgatattccgcgcaacatc
gaatcctattatcaggaaaccggccgcgccggccgcgatggcttgcccgcagaagccgtg
atgctgtatgacccggcagatattgcctggctgcgccgtatgctggatgagaaaagcgac
ggcccgcaaaagcaggtggaaacccacaagctgaccgccatgagcaactttgccgaagcg
caaacctgccgccgtcaggtgctgctcaactactttggcgaatatcgcgacaagccgtgc
ggcaactgcgatatctgcctcgatccgcccaaacatttcgatgccaccgaagaggcgcgc
aaagcgttgtcgtgtgtctatcgcgtcaatcagagctttggtatcggctatgtggtggaa
gtgctgcgcggcatgcagaacattcgtattcgcgagcatggccacgacaagatttcgact
tacgggctcgggcgagatcacagccacgactactgggtaagtatcttccgccagttgatt
cacaaaggcatgctgcatcagaacatcacgcgcaactcgacgttgcaactgaccgaagaa
gcgcgtccgctgctgcgcggcgatatgtcgctggaactggcggtgccgcgtttggatacc
gcggtgcgcgcggccaaagcggataaactgtcgagcaaaaactacgacaagaaactgttc
gccaaactgcgcaagctgcgtaagtcgattgccgatgaagaagggttaccgccgtacgtg
gtgttcagtgacgcgactttgattgatatggcggacattctgccgacatcgtatggcgaa
atgctggcggtgagcggtgtgggccagcgcaaactggaaaaatacgccgacccgtttttg
gacttaattcaggagcatctgacctatcatggctga
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