Aliivibrio fischeri MJ11: VFMJ11_0054
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Entry
VFMJ11_0054 CDS
T00754
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vfm
Aliivibrio fischeri MJ11
Pathway
vfm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vfm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VFMJ11_0054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vfm03019
]
VFMJ11_0054
Enzymes [BR:
vfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VFMJ11_0054
Messenger RNA biogenesis [BR:
vfm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VFMJ11_0054
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
ACH65016
UniProt:
B5FF87
LinkDB
All DBs
Position
I:complement(59563..60861)
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AA seq
432 aa
AA seq
DB search
MKKTHITEQNFADLGLQPQVIDGLNAKGFIKCTPIQAKALPVLLAGQDIAGQAQTGTGKT
LAFLTATFNHLLTTPAPEGRKITQPRAIIMAPTRELAIQIFNDAESLIASTGLKAALAYG
GERYEKQQQVIEQGVDILIGTTGRIIDFYKQGHIDFKMIQAVVLDEADRMFDLGFIKDIR
FIFRRMPAPTERLNMLFSATLSYRVQELAFEHMQEPEHVVVEPEQKTGHRIKEELFYPSN
DHKMALLQTLIEEEWPDRAIIFANTKHKCESVWGHLAADKHRVGLLTGDVPQKKRERILE
EFTQGNVDILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGASGNSISFA
CEEYAINLPAIEEYIEHSIPQSDYDASALLEDLPAPLRLQRRPQQNRRNNNGQRQGGNRK
HSRPRQPRNTQS
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgcacatcacagagcaaaactttgccgacctaggtttacagcctcaggtt
atcgatggtttgaatgcaaaagggttcattaaatgtaccccaattcaagctaaggcattg
ccggtactgctcgccggccaagacattgcaggccaggcccaaacgggtacaggtaagacg
ttagcgttccttactgctacttttaatcacctattaacgacaccagcacctgaaggtcgt
aaaatcacacaaccgcgtgccattatcatggctccgacacgtgaattagcgattcaaatc
ttcaatgatgctgaatcacttatcgcaagcacaggcctaaaagcggcactggcttacggt
ggtgagcgttatgaaaaacagcaacaagtgattgagcaaggcgttgatattttgatcggt
acaaccggtcgtatcattgacttctacaagcaaggtcacatcgactttaaaatgattcaa
gctgttgttcttgatgaagccgatcgcatgttcgatttaggctttattaaagatattcgc
tttatcttccgtcgtatgcctgcgccaacagaacgcttaaacatgctgttctctgcgacg
ctatcttaccgtgtacaagagcttgcttttgaacacatgcaagagccagagcacgttgtt
gttgaaccagaacaaaaaacaggtcatcgcattaaggaagaacttttctatccttcaaat
gatcataaaatggcattacttcaaacacttattgaagaagaatggccagatcgtgcgatt
atctttgcaaacacaaaacacaaatgtgaatcagtttggggtcacttagccgctgataaa
caccgtgttggccttcttacaggtgacgttccgcagaaaaaacgtgagcgcattttagaa
gaatttacacaaggtaatgttgatatcttagttgctaccgatgtagctgctcgtggtcta
catattccacaagtaacacacgtatttaactttgatttaccaaacgaagctgaagattac
gttcaccgtattggccgtacaggtcgtgcaggtgcaagcggtaactctattagctttgca
tgtgaagaatacgcaattaatcttcctgctatcgaagagtacattgagcattcaatccca
caatctgattacgatgcttctgcattattagaagatttgcctgcaccattacgtcttcaa
cgtcgtccgcagcaaaatcgtcgtaacaacaatggtcaacgtcaaggcggcaaccgtaag
cattctcgcccacgtcaaccacgcaatactcaatcgtaa
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