Aliivibrio fischeri MJ11: VFMJ11_0068
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Entry
VFMJ11_0068 CDS
T00754
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vfm
Aliivibrio fischeri MJ11
Pathway
vfm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vfm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VFMJ11_0068 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vfm03019
]
VFMJ11_0068 (recQ)
03400 DNA repair and recombination proteins [BR:
vfm03400
]
VFMJ11_0068 (recQ)
Enzymes [BR:
vfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VFMJ11_0068 (recQ)
Messenger RNA biogenesis [BR:
vfm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VFMJ11_0068 (recQ)
DNA repair and recombination proteins [BR:
vfm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VFMJ11_0068 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ACH64933
UniProt:
B5FFA1
LinkDB
All DBs
Position
I:77958..79793
Genome browser
AA seq
611 aa
AA seq
DB search
MSSMIAEQPMEEVSPSYTVLKDVFGYQEFRVGQEEVINAVLEGKDSLVIMPTGGGKSLCY
QIPALVFEGLTLVISPLISLMKDQVDQLKANGVKAECLNSTIEREEQIAIWNRVNAGQVK
MLYVSPERVMMRDFMDRLESLNLCMIAVDEAHCISQWGHDFRPEYASLGQIKQRFPSVPI
MALTATADEATRKDILHRLSLPDPHQYLGSFDRPNIRYTVLEKHKPVSQIVRYLATQKNQ
CGVIYCGSRKKVEMLTEKLCNNHIRAASYHAGLDLDERNYVQEAFQRDDIQIVVATVAFG
MGINKSNVRFVAHFDIPKNIESYYQETGRAGRDGLPAEAVMLYDPADIVWLRKLVEEKPE
GPQKLVESHKLNAMTAFAEAQTCRRQVLLNYFGEYSAKPCGNCDVCLDPPKQFDGTEAAQ
KALSCVYRVNQSFGVGYVVEVLRGLKIARIREHGHDKLSTYGIGKEHTHEYWVSIIRQLI
HKGLLVQNITRNSTLQLTEEARPILKGQEPLELAVPRLDIAAKTAKSEKLNNRNYDKQLF
AKLRKLRKSIADRDDLPPYVVFSDATLMDMADILPTSYGEMLAVNGVGQKKLEKYADPFL
DLIEMHLTGQG
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcatgatcgcagaacaaccaatggaagaggtgtcgccaagttacacggtttta
aaagacgtgtttggctaccaagaattccgtgttggacaagaagaagtcatcaatgctgtc
ttagaaggtaaggatagtcttgtcatcatgcctactggtggtggtaagtcgctttgttat
cagatcccagcgttggtttttgaagggctaacactggtgatttcaccgttaatatcctta
atgaaagaccaagttgatcaacttaaagcgaatggggtaaaagcagagtgcttaaactca
accattgagcgtgaagagcaaatagcgatttggaatcgagtgaatgctggtcaggtgaaa
atgctttatgtgtcgcctgagcgtgtgatgatgcgtgactttatggatcgtttagagtct
ctaaacttgtgtatgattgctgttgatgaagcgcattgtatttctcagtggggtcacgat
ttccgtcctgaatacgcatcattaggacagattaaacagcgttttcctagtgttccgatt
atggctctcaccgcgactgctgatgaagccactcgtaaagatattctacatcgtctttct
ttgcctgatccgcatcaatacttgggcagttttgatcgcccaaatattcgttatacggta
ttagaaaagcacaaaccggtgagccagattgttcgctatcttgcgacgcaaaaaaatcaa
tgtggtgtgatttattgtggcagtcgaaagaaagttgaaatgttgactgagaagctctgt
aacaaccatattcgtgcggcgtcttatcatgctggtttagatctggatgagcgtaattac
gttcaagaagcctttcagcgagatgatattcaaatcgtggtagctactgttgcttttggt
atggggatcaataaatccaatgtacgttttgttgctcactttgatattccaaagaacatc
gaatcctattaccaagagacaggtcgagcagggcgtgatggtctgccagctgaagcggtc
atgctttatgatcctgccgatatagtttggttaagaaaactggttgaagagaagcctgaa
ggccctcaaaagcttgtagaaagtcataaattgaatgctatgaccgcctttgctgaagca
caaacttgtcgtcgtcaggttcttttaaactattttggtgaatacagtgctaagccctgt
ggtaactgtgatgtgtgtttagatccgccaaagcaatttgatggaacagaagcggcacaa
aaagcactttcttgtgtttatcgagtaaatcaaagttttggtgttggctatgtagtggaa
gtgctacgtggtcttaaaattgctcgtattcgtgaacatgggcacgataagttatcgacc
tacggtattggcaaagagcacacccatgaatactgggtaagtattattcgtcagttaatt
cataaaggattattggtacagaatattacgcgcaactctacattacagctaacggaagaa
gcccgtccgattttaaaaggacaagagccgttagaactagcagtaccgcgattggatatt
gcagcaaaaacggcaaaatcagagaaattgaataatcgtaattacgataaacaactattt
gctaaattacgtaagctgcgtaaatccatcgctgatcgagatgacttaccgccttatgtg
gtattcagtgatgcaaccttaatggatatggctgacattttaccgacctcttatggagag
atgttagcagtaaatggcgtagggcagaagaagcttgaaaaatacgcagatccattttta
gatttaattgaaatgcacttaacaggacaaggataa
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