Aliivibrio fischeri MJ11: VFMJ11_0072
Help
Entry
VFMJ11_0072 CDS
T00754
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vfm
Aliivibrio fischeri MJ11
Pathway
vfm03030
DNA replication
vfm03410
Base excision repair
vfm03420
Nucleotide excision repair
vfm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VFMJ11_0072
03410 Base excision repair
VFMJ11_0072
03420 Nucleotide excision repair
VFMJ11_0072
03440 Homologous recombination
VFMJ11_0072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vfm03032
]
VFMJ11_0072
03400 DNA repair and recombination proteins [BR:
vfm03400
]
VFMJ11_0072
Enzymes [BR:
vfm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VFMJ11_0072
DNA replication proteins [BR:
vfm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VFMJ11_0072
DNA repair and recombination proteins [BR:
vfm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
VFMJ11_0072
NER (nucleotide excision repair)
GGR (global genome repair) factors
VFMJ11_0072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Obc1_cap
HHH
Motif
Other DBs
NCBI-ProteinID:
ACH65162
UniProt:
B5FFA5
LinkDB
All DBs
Position
I:83222..86020
Genome browser
AA seq
932 aa
AA seq
DB search
MARIPDNPFILVDGSSYLFRAYHAAPNFTNGDGQPTGAVYGVINMLRSLLKQFGTDRIAV
IFDAKGKTFRNDMYPEYKANRPPMPDDLRCQIEPLHKLIKAMGLPLVSIPGVEADDVIGT
LASQASKAGIPVLISTGDKDMAQLVDENVTLINTMTNVIMDPEGVVEKFGIGPELIIDYL
ALMGDKVDNIPGVPGVGDKTAKALLQGIGGLDALYEHLDDIAPLGFRGSKTMAKKLIDNK
EGAYLSYELATIKLDVELDKTPEEFVKQEPNVDELIQMFGQMNFKRWLTEMLDGSDGKIV
SHETSSNSVSTSSKQDDAEEELIVAAQVDRSKYETILTKEAFSVWLDKLNNADVAAFDTE
TDSLDYMVANLIGLSFAVEEGEAAYVPVAHDYLDAPEQLDRDWVLEQLKPYLEDDNKAKV
GQNLKYDASVLARYDIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQHNTISFEEIA
GKGKKQLTFNQIALEQAAPYAAEDADITLRLHHVLNAKLEADEKLKSVFTDIELPLVSVL
SRMERKGVYIDDMLLSAQSLEIGQRLDELEKAAFEVAGEEFNMNSPKQLQTILFEKMELP
VIKKTPSGAASTNEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHT
SYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPHGWKILAVDYSQIELRIMAHL
SQDKALLAAFSAGKDIHAATAAEVKGVSIEEVTSEDRRRAKAINFGLIYGMSAFGLAKQI
GIPRGEAQDYMNVYFERYPGVMQYMEETRLLATEQGYVETLYGRRLHLPEINARNGMRRK
AAERAAINAPMQGTAADIIKKAMILVDEWVETEGKDRVNLLMQVHDELVFEVKEDALDEV
TTKVRELMEQAVQLDVPLVAEAGFGNNWDEAH
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaattcctgataatccgtttattttagtagacggctcttcttatcttttccgc
gcatatcatgctgcacctaacttcactaatggtgatggacaaccaacaggtgcggtatat
ggcgtaattaacatgcttcgtagtctgttaaagcaatttggaactgatcgtattgcggtt
atcttcgatgcaaagggcaaaacgttccgtaacgatatgtacccagagtacaaagcaaat
cgtccaccaatgcctgatgatctgcgttgtcagattgagccactacacaagctaattaaa
gcgatgggtttgcctttagtttctattccaggcgtagaagcggatgatgtaatcggtacg
ttagcttctcaagcatcaaaagctgggatcccagttcttatcagtactggtgataaggat
atggcacaattagttgatgaaaatgtcactctgattaataccatgactaatgtgatcatg
gatcctgaaggtgtggttgagaagtttggtattggtccagagcttattattgattactta
gcattaatgggcgataaggtggataacattcctggtgttccaggtgttggtgataaaacc
gctaaagcattattgcaaggcattggtggtttagatgctttatatgaacatcttgatgat
atagctcctcttggtttccgtggttctaaaaccatggctaaaaagctaattgataacaaa
gaaggggcttacctttcttatgaattagcaacgattaagttggatgttgaactggataaa
acgccagaagagtttgttaaacaagagccaaacgtagatgaactgatccaaatgtttggt
caaatgaactttaagcgttggttaactgaaatgttagatggaagcgacggtaagatcgtt
tcacatgaaacatcgtctaatagcgtatcaacttcaagtaagcaagatgatgcagaagaa
gagctaattgttgccgctcaagtagatcgttcaaaatacgaaacgattttaactaaagaa
gcgtttagcgtatggctagacaaactaaacaatgccgatgttgcggcttttgatactgaa
accgatagcttagattacatggttgctaatcttattggtttatcatttgctgtagaagaa
ggcgaagcggcttatgttcccgttgcacatgattaccttgatgctccagaacaattggat
cgtgattgggtacttgagcagttaaagccgtatttagaagatgacaataaagcaaaagtt
ggtcaaaacttaaagtacgatgcgagtgttttggcgcgctatgatatcgaaatgaaaggc
attaaattcgatactatgcttgagtcttatgtgtataacagcgttgctggtaagcacaat
atggacagtttggcattgcgctaccttcaacataacaccatttcatttgaagaaattgca
ggtaaaggtaaaaagcaattaacctttaaccaaatcgctttagagcaagctgcaccttat
gccgctgaagatgcggatatcacattgcgtctgcatcatgtcttgaacgcgaaattagaa
gccgatgaaaaactaaaatcagtatttacagatattgaattaccattggtatctgtcctt
tctcgtatggagagaaaaggcgtttatattgatgatatgttgctttcagcacaatcactt
gaaatcggtcagcgtttagatgagttagaaaaagcagcatttgaagttgctggtgaagag
ttcaatatgaattcaccaaaacaacttcaaaccattctatttgagaaaatggaactgcca
gtaattaagaagacaccttctggagcggcatcgacaaatgaagaagtgctgcaagagttg
gcgcttgattacccattgcctaaattgattttagagtaccgtggcttagcgaaactaaaa
tcgacctatacagataaacttcctaagatgattaatccatctacaggccgtgtacatacc
tcttatcaccaagcggtaactgcgacaggtcgtttatcatcaaccgatccaaacttacag
aatattccaattcgtaacgaagaaggtcgccgtattcgccaagcgtttgttgcccctcat
ggttggaaaattctagcagtcgattactctcaaattgaattgcgtattatggctcattta
tctcaagataaagcgctattagcggctttctcggctggtaaagatattcacgcagcgaca
gcagcagaagtgaagggcgtgtctattgaagaggtgacttcagaagatcgtcgtcgtgct
aaggcgattaactttggtttaatctatggcatgagtgcgtttggtcttgctaaacaaata
gggatcccccgtggtgaagcacaagattacatgaatgtgtattttgagcgttacccagga
gtgatgcagtacatggaagagacgcgtttattagcgactgaacaaggttatgttgagacg
ttatatggccgtcgtctacacttacctgaaatcaatgctcgaaatggtatgcgtcgtaaa
gctgcagaacgtgcagcgattaatgccccaatgcaaggtactgctgctgatatcattaag
aaagcgatgatcttggttgatgaatgggttgaaactgaaggaaaagatcgtgtgaatctt
ttaatgcaagtacacgatgaattggtttttgaagtaaaagaagacgcattagatgaagtg
acgactaaagtaagagaactcatggagcaagctgttcaacttgatgttccactcgttgct
gaagccggttttggtaataactgggatgaagcgcactaa
DBGET
integrated database retrieval system
