Aliivibrio fischeri MJ11: VFMJ11_0489
Help
Entry
VFMJ11_0489 CDS
T00754
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
vfm
Aliivibrio fischeri MJ11
Brite
KEGG Orthology (KO) [BR:
vfm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vfm03016
]
VFMJ11_0489
Enzymes [BR:
vfm01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
VFMJ11_0489
Transfer RNA biogenesis [BR:
vfm03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
VFMJ11_0489
Prokaryotic type
VFMJ11_0489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
ACH65915
UniProt:
B5FA81
LinkDB
All DBs
Position
I:513823..514773
Genome browser
AA seq
316 aa
AA seq
DB search
MARRRKGRPVNGVILIDKPTGITSNDTLQKVKRIYFAEKAGHTGALDPLATGMLPICLGE
ATKFSQFLLDSDKRYRVVAKLGERTNTSDSDGEVVQTREVKVDRGQLERCIAKFRGTTDQ
IPSMFSALKYQGRPLYEYAREGIEVPRESRKITVYSIELLRFEGHEVEMEVHCSKGTYIR
TITDDLGEMLGCGAHVTYLRRTGVSNYPYENMVTIEDLEALLEQAHREERAPRELLDPLL
MPMDSAVQDLPEVNMIPELADHVLHGQPVQVFGAPQDGIVRMTSGDERLFIGVGHIDDDG
RVAPKRLVVFRDEEEK
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atggctcgccgtcgtaagggtcgtccggttaatggtgttatcttaattgataaaccaaca
ggtattacttcaaacgatactctgcaaaaagttaaacgcatttactttgctgaaaaagca
ggtcatacaggtgcacttgatcctctagcaacaggtatgcttcctatttgtttaggtgaa
gcaacgaagttttctcagtttcttttagactctgataaacgctaccgtgttgtcgctaaa
ctaggtgagcgtacgaatacatcagactctgatggtgaagtggttcaaactcgtgaagta
aaagtggatcgcggtcagctagagcgttgtattgcgaaattccgtggtacaacggatcaa
attccatcaatgttttcagcattaaaataccaaggtcgtcctttgtatgagtatgcacgt
gaaggcattgaagtacctcgtgagtcacgtaagattactgtttattctattgaattgctc
cgttttgaagggcatgaagtagaaatggaagtacattgttcaaaaggtacttacattcgt
acgatcactgatgatttgggtgaaatgctaggttgtggtgcgcacgtaacttatttacgt
cgtacaggcgtgtcgaactacccatatgagaatatggtaacgatcgaagacctagaagca
ttacttgagcaagcacatcgtgaagaaagagctcctcgtgagttgcttgatccattatta
atgccaatggattcagcagtacaagatttacctgaagtaaatatgatccctgaattggca
gatcatgttttacacggtcaaccggtacaagtgtttggtgctccacaagatggcattgtt
cgtatgacatcgggtgatgaacgtttattcattggtgttggtcacattgatgatgatggt
cgtgttgctcctaagcgtttagttgtttttcgagatgaagaagaaaaataa
DBGET
integrated database retrieval system
