Aliivibrio fischeri MJ11: VFMJ11_0595
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Entry
VFMJ11_0595 CDS
T00754
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V, gamma subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
vfm
Aliivibrio fischeri MJ11
Pathway
vfm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VFMJ11_0595 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vfm03400
]
VFMJ11_0595 (recC)
Enzymes [BR:
vfm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VFMJ11_0595 (recC)
DNA repair and recombination proteins [BR:
vfm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VFMJ11_0595 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Fucose_iso_N2
Motif
Other DBs
NCBI-ProteinID:
ACH65935
UniProt:
B5FAS4
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All DBs
Position
I:621507..624926
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AA seq
1139 aa
AA seq
DB search
MFTVYHSNQLDVLKSLVVELIRLNPLDNPFEQEQILVQSPGMSQWLKIELAKELGIAANL
TFPLPATFIWDLFTQVLDDVPKRSAFHKEAMTWKIVTLLPELLKQEEFAPLQRYLENDEN
QLKCYQLAAKIADIFDQYLVFRPEWIQLWEAGEEVAELEGEHPWQPILWRALYDQTLALG
HSPYHRANMFEHFIETLENYLQTGTLPKGMPKRLFVVGITSLPPRYLDALAALGQHIDVH
LMFTNPCRYYWGEIRDRKYLARLEARNRLQVKWLDDHSEHIGDTEQLKGSIEANFEDELH
TSEVGNSLLASWGKLGRDNLCLLSEMEAQEIDAFVDVGNDNLLHSIQSDILNLEERSRDD
VLDNSQHKQSISSNDRSILLHSCHSPMREVEVLHDQLLDMFASDPDLKPRDIIVMVADIN
VYSAAIQAVFGNAAFDRYIPFAISDQSAEQENPVLLAFMTLMALPENRCGLSELLTLLEV
PAVMSRFKFNAEQFDIVKRWAEETGIRWGLDNSTSAQFDLPEHNQNSWLFGIQRMLLGYA
MEQGAGLFEGMASYEQVQGMNAEIAGNLAQFIDQLLTYQIILGQPHAITTWRTTINQLMD
DFLDVELEGELVVKSIRDQLQKLEENLEDAGFDAPISAPIINNYLKNNLSGGKASQRFLA
GQVNFCTLMPMRSIPFDVVCLLGMTDGSYPRTMPVEGFDLMQKRMKPGDRSRRDDDRYLF
LEALQSANKAFYLSYIGRSIRDNTEKAPSVLVSELLEYCQQGYCLEGDNELNPEASAKRL
VKQLTIEHPLVPYSQQSFIGDNTSYASEWLPTAKLEGAAAPEFQTAPLVFASETKELELT
ELQRFWRLPVAYFFNRGLKVFFESVESRVEDDEPFTIDGRTGYGMKSDLLEDLLAYDDPN
HVSQISRDFYQQQKAQGKLPIGSFGEIAADKEVNTVKDLVAHIQPLTTLPLDDQEVRLRF
TFPHGEMELQGWLKQRYQAGMLRYRGGKIRSHEILATWIDHLCLCAMGQQQFTHLFGTDA
IYHFEAIEKEKAYQELETILSLYISGNCAPLAYLPKAALAGLEAHVDKKGVWNDDEETHQ
KALKKMADEYNGTRFAGENSNDYVIRMWPEWNDDFGQAIFDNAQKVLRNALLHSEKEKL
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
gtgtttactgtttatcattcaaatcaacttgatgttcttaaatcacttgtcgttgagtta
attcgccttaacccccttgataacccgttcgaacaagagcaaatacttgttcaaagtccc
ggtatgtcgcaatggctcaaaatcgaactcgcaaaagagttaggtattgcagctaacctt
acttttccacttcctgctacttttatttgggatctgtttactcaggtacttgatgatgtg
ccaaagcgtagtgcttttcacaaagaagccatgacatggaagatcgtgacattattacca
gagctgttaaaacaagaggagtttgcacctctgcagcgctatttagaaaatgatgaaaac
caacttaagtgttatcaactggctgcaaaaattgccgatatctttgaccaatatttagta
tttcgcccagagtggattcaactgtgggaagccggagaagaagttgctgaattagaaggg
gagcatccttggcaacctattttatggcgagcattatatgatcaaacgcttgctcttggt
cattcgccttaccatcgtgccaatatgtttgagcactttattgaaactctcgaaaattac
ctacaaacgggcactttgccaaaagggatgcctaagcgtttgtttgtggtgggcattact
tcacttcctcctcgttacttagatgcgcttgcggcgttaggtcagcatattgatgtgcac
ctaatgtttactaatccgtgtcgctattattggggtgaaattcgagacagaaaatacctt
gctcgtttagaagcccgtaaccgtctgcaagttaaatggctagatgatcatagtgagcat
attggtgatacagaacagctaaaaggctcaattgaggctaattttgaagatgaattacat
acttctgaagtggggaattccttgcttgcctcatgggggaaattaggccgagataatctg
tgcttactctctgagatggaagcacaagagattgatgcgtttgttgatgttggtaacgat
aatctactgcattctattcagtctgatattttaaatcttgaagagcgcagccgtgatgat
gtgcttgataacagtcagcataaacagtcaatcagttctaatgatcgttccattcttttg
cattcgtgccatagtccaatgcgagaggttgaggttttacacgatcagttattggatatg
tttgctagtgacccagacttaaagccacgcgacattatcgtgatggtggcagacatcaat
gtttacagtgcagcgattcaagccgtctttggtaatgcggcttttgatcgttatattcct
tttgcgatttccgatcaaagtgctgagcaagaaaacccagtgttattggctttcatgact
ttgatggcgctgcctgagaatcgttgtggtctttctgaattgctcacattattggaagtg
cctgccgtaatgtctcgttttaaattcaatgctgagcaatttgacattgtgaaacgctgg
gctgaagaaaccggtattcgctggggattagataacagcacatctgcacagtttgatctt
cctgaacacaatcaaaactcgtggttatttggtattcaacgcatgttgcttggttatgcg
atggagcaaggtgctgggctattcgaaggcatggcgagttacgagcaagtgcagggcatg
aatgcggaaattgccggtaacttagcgcagtttattgatcagcttttgacttatcagatc
atcctaggccaaccgcatgccattacaacatggcgaaccaccatcaaccaattaatggat
gattttttagatgttgaattagaaggtgaattggtcgttaaaagcattcgagatcaactg
caaaagctagaagagaatttagaagatgcgggttttgatgcaccaatttcagcgccaatt
attaataattatctgaaaaataacttatctggcggtaaagcgagtcaacgattcttagcc
gggcaagttaacttttgtactttaatgccaatgcgttctattccatttgatgtggtgtgt
ttgcttgggatgacggatgggtcttacccgcgaactatgcctgttgaaggtttcgattta
atgcaaaaacgcatgaaaccgggtgaccgctcacgtcgagatgatgatagatatctgttc
ttagaagcactgcaatcggcaaataaagcattttatttaagttatattgggcgttcaatt
cgcgataacacagaaaaagcaccgtcagtattagtcagtgagttacttgaatattgccag
caaggttattgcctagagggtgataatgagttaaaccctgaagcatccgcaaaacgcttg
gttaagcaattaaccatagaacaccctctggttccttatagccaacaaagttttattggt
gataacacaagctatgcaagcgagtggttaccaacggctaaattagaaggggctgcagca
cctgagtttcagactgcgccattagtgttcgcttcagaaacaaaagagctagagttgact
gaactgcaacgtttttggcgtttacctgtcgcttatttctttaatcgtggtttaaaagtc
ttttttgaatcagtagaaagtcgagttgaggatgatgagccgtttaccatcgatggtcgt
actggctatggtatgaagtcggatctattagaggacttattagcttatgatgatcctaac
catgtatcccaaatctctcgtgatttttatcagcagcaaaaagcccaaggtaaattaccg
attggtagctttggtgaaatagcagcagataaagaagtgaacacggtaaaagatttggtt
gctcatattcaaccattaacgacgttaccattagacgatcaagaagtacgtttacgcttt
accttccctcatggtgaaatggaactgcaaggttggttaaaacagcgttatcaggcagga
atgctgcgttatcgtggtggtaaaattcgttcacatgaaattctagcaacttggattgat
catctatgtctgtgtgctatgggtcagcagcaatttactcacctatttggtacagatgcg
atttatcattttgaagctattgagaaagaaaaagcgtaccaagaactagagactatatta
agtctttatatttcgggtaactgtgcgccgttagcttatttaccaaaagcagcattagca
gggctcgaagcgcacgttgataaaaaaggtgtgtggaatgatgacgaagaaacacatcaa
aaagctctgaaaaaaatggcagatgaatacaatggaacccgctttgctggtgaaaatagc
aatgattatgtgattcgcatgtggccagaatggaatgatgattttggtcaggctattttt
gataatgctcaaaaggtgttacgcaatgcattactacatagcgagaaagaaaagttataa
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