Aliivibrio fischeri MJ11: VFMJ11_1243
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Entry
VFMJ11_1243 CDS
T00754
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
vfm
Aliivibrio fischeri MJ11
Brite
KEGG Orthology (KO) [BR:
vfm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vfm03400
]
VFMJ11_1243
DNA repair and recombination proteins [BR:
vfm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VFMJ11_1243
Archaeal homologous recombinant proteins
VFMJ11_1243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
AAA_23
AAA_29
NTPase_1
ABC_tran
AAA_21
nSTAND3
SMC_N
Motif
Other DBs
NCBI-ProteinID:
ACH66236
UniProt:
B5FDP9
LinkDB
All DBs
Position
I:1313132..1316812
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AA seq
1226 aa
AA seq
DB search
MRILSLSFSNLNSLKGEWKIDFSASPFAENGLFAITGPTGAGKTTILDAICLALYHKTPR
LGGISTSSNEIMTRGTAECSAEVEFEVKGKAYRAFWSQRRSRGKVDGNLQAATVELAEVD
SEKVLATQVKKKDELINTITGLDFSRFTKSMMLSQGQFAAFLNADANDRAGLLEELTGTE
IYGQISEKVHEHYTVSKQKLGELKAKAEGVELLSEEDKQALIDEQTELQANQKQQQAQLT
EWQAHVEWWNAEVKNQQQYQQAIENHQLALDKEKQASEQLHCLAQSEPAEKLRAPYQLWQ
EAQERFDEVVKELSLTEVSHQQKTSDKLTLESHVIQLKQVFDGVKVENKALEALINDSIQ
PLDTTISQLTQQSQEKQQNITHLTTRYEEGHKKQQHLTVTLSDVTEKLVQLASYVEKHQS
DVQLERYLGQWKKQVSHILQQDKEVSALNSKVVSADTTLSALLAGITKKEAELHQVQVVV
NNEVNALKAAELALQQSQEKGTEAQLVEQIAVLTNRHQYRVELTHTNNEYLRAIKELQTL
EIVQKTQSEEIQTLEAQRAELGSQFKLLEQQVIDLTTLIEQEGELAKYRAELMKDQDCPL
CGSTHHPLLEQSQSLDLNATMQRKKEAEQKRAEIVEQGKSVREQLDSLKVKQEHCQSQCV
QYQDIVKLMQQQWSGLLEATQLTLGLGDTDTINQSIVECEVLFTELNEQAKQVRQADEKY
RAQQSQLQQAQHRFDTVMTGLEYDRKSHQSAVQLQFDDKAKLEQLHQRDSELKQQLIDEI
EQTGFNVPKLAEIESWFTQKEQDLQRIQQQISEQQSFTQQQQNLQSEHGHLSEQLSELTN
QLQTAQADFLLLTSELEQQKAKRVELFGLQEVKVARSEMVEKLSNSEQNYQIEQQKLQTL
VQELAVIEGKLTSLKQSHATNEKLTAERSDVWKEALSHSPFETLELFQAALISEEERQQL
LSLKTEIQQSIERTTALLESAQQIKEQHYQAPKAAEWQLMPKDTVESELAQVKSLSESLV
KREGEIAQALRSNDERKTNQKTLFEAIEAYQSEYDDIQYLHSLIGSQKGDKFRKFAQGLT
LENLVYLANKQLTRLHGRYELKRKASDGLELQVLDTWQGDVVRDTKTLSGGESFLVSLAL
ALALSDLVSHKTSIDSLFLDEGFGTLDSETLDMALDALDNLNASGKMIGVISHIEAMKER
IPVQIKVTKRSGLGVSELEKQYKKVS
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgagaattttaagtctaagtttttcaaatttaaactcattaaaaggtgagtggaaaatt
gatttctcagcatctccttttgcggaaaacgggttgtttgcgattactggcccaacagga
gcgggtaaaacgacgattttagatgcgatttgtttagcgctttatcataaaacccctcgt
cttggtggtatttcaacatcaagcaatgaaatcatgacacgtggcactgcggaatgttct
gcagaagtggaatttgaagtgaaaggcaaagcgtatcgtgcattttggagtcagcgtcgc
tcacgtggcaaagtggatggcaatttacaagccgctaccgtagagcttgcagaggtggac
tctgaaaaagtattagcaactcaagttaaaaagaaagatgagctaattaataccattaca
ggcttagatttttctcgttttacaaaatccatgatgctttctcaagggcaatttgctgcg
tttttaaatgcggatgccaatgatcgtgctggtttactggaagagttaactggtacagag
atctacggtcagatctcagaaaaagtgcatgagcattacaccgtatcaaaacagaaatta
ggtgagcttaaagccaaagctgaaggggttgagctgctttctgaagaggacaaacaagcg
ctaattgatgaacaaactgaattgcaagccaaccaaaaacagcaacaagcgcagttaacc
gaatggcaagcgcatgttgagtggtggaacgcagaggttaaaaaccaacagcaataccaa
caagcgattgaaaatcatcaattagccttggataaagaaaaacaagcgagcgagcaatta
cattgtttagcacaaagtgaacccgctgaaaaactgcgtgcgccttatcaactgtggcaa
gaagcacaagagcgttttgatgaagtggttaaagaattgagcttaaccgaggtatctcat
caacaaaaaacaagtgataaattgacacttgagtctcatgttatacagctaaaacaagtg
tttgatggggttaaggttgagaataaagcattagaagccttaatcaatgattcgatacaa
ccgcttgatacgacaataagtcaattaactcaacagtcgcaggaaaaacagcagaacatt
acccatctgacgacacgttatgaagagggtcataaaaagcaacaacacttaacggtgacg
ttatctgatgtgactgaaaaattggttcagttggcgagttatgttgagaagcaccaatct
gatgtgcaacttgagcgttatttaggtcaatggaagaaacaagttagtcatattttacag
caagataaagaagtgagcgcgttaaacagcaaagtagtatcagctgataccacattaagc
gctttacttgcgggtattacgaaaaaagaagcggaattacatcaagttcaagttgttgtt
aataatgaagtgaacgcgttaaaagcggcagagcttgcattacagcaatcacaagaaaaa
ggcacagaagcacaactggtagagcaaattgcggtactaaccaatcgtcatcaatatcgt
gttgaattgactcatacaaacaatgagtatttgcgagcaataaaagagctgcaaacctta
gagattgtgcagaaaacgcaatctgaagagattcaaacgttggaagcgcagcgtgccgaa
ttaggttcgcagtttaagctactagaacaacaagtaatcgatttaaccacattaattgag
caagaaggcgaactagcaaaatatcgtgctgaattaatgaaagatcaggattgcccactg
tgtggctcaacacatcatccattgttagaacagtctcaatcccttgatcttaatgccacc
atgcagcgtaaaaaagaggcagaacaaaagcgtgcagagattgttgaacagggcaaatca
gtacgtgaacaattggattcactcaaagtaaaacaagaacattgccaatctcaatgcgtg
cagtatcaagatattgttaaattgatgcagcagcagtggtctggtttattagaagccact
caattaaccttaggtttgggcgatacggatacgattaatcagtcgattgttgagtgcgaa
gtgttgttcactgaacttaatgaacaagcaaaacaagtacgccaagcggatgaaaaatac
cgagcgcagcaaagtcaattacaacaagctcaacatcgctttgatactgtaatgactgga
ttagagtacgaccgtaaatcacatcaatcagcggttcagctacaatttgatgacaaggcc
aaattagaacaactgcaccagcgtgattctgagttaaaacaacagttgatagatgagatt
gagcaaaccggatttaatgtccctaaattggcagaaatagaatcatggtttacgcaaaaa
gagcaagatttacaacgtattcaacaacagatttcagagcaacaaagctttactcagcaa
caacaaaatctgcagagtgagcatggccatttatcagagcaattaagtgagttaacgaat
cagttacaaacagctcaagcggatttcttgttattgacttcagaactagaacagcaaaaa
gcaaaacgtgttgagttgtttggactgcaagaagtcaaagttgcacgttcagaaatggtt
gagaaattgagtaactctgaacaaaactatcagattgaacaacaaaagctgcaaacatta
gtgcaagaactcgcggttatagaaggtaagttgacgagcttaaaacaaagtcatgcaact
aatgaaaagctgacagcagagcgaagtgatgtatggaaagaggcgttatcgcatagccca
tttgaaacactagagttgttccaagcagccttgatttcagaagaagaacgccaacaacta
ctcagcttaaaaactgaaatacaacaatctattgaacgaactactgctttgctagagagt
gcacagcaaatcaaagagcaacattatcaagcgccaaaagcagcagagtggcaattaatg
ccaaaagacaccgttgagagtgaattggctcaagtgaagtcgttatctgaaagtttagtg
aaacgtgaaggtgagattgctcaagccttacgttcaaatgatgaacgcaagaccaaccaa
aagactttgtttgaagcaatagaagcgtatcagtctgaatacgatgatattcaatatttg
cattcattaattggttcgcaaaaaggggataaattccgtaagtttgcacaaggattaacg
ttagaaaacctcgtttatttagccaataagcaattaactcgtttacatggtcgctatgag
cttaaacgtaaagcgagcgatgggttagagctgcaagtgttagatacatggcagggtgat
gtggttcgtgacaccaaaaccttatcgggtggcgaaagcttcttagtcagtttggcgtta
gcgttagcgctttctgatctggttagtcacaaaacgagcattgattcgctgttcttagat
gaaggttttggtacgctagatagtgaaacgctagatatggcgcttgatgctttggacaat
ctaaacgcatctggaaaaatgatcggtgtgataagtcacattgaagcgatgaaagaacgt
attccagttcaaataaaagtcaccaaacgcagtggactaggcgtgagtgaactagaaaaa
caatataaaaaagtcagttaa
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