Aliivibrio fischeri MJ11: VFMJ11_1575
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Entry
VFMJ11_1575 CDS
T00754
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
vfm
Aliivibrio fischeri MJ11
Pathway
vfm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
VFMJ11_1575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vfm03400
]
VFMJ11_1575
Enzymes [BR:
vfm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
VFMJ11_1575
DNA repair and recombination proteins [BR:
vfm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
VFMJ11_1575
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VFMJ11_1575
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VFMJ11_1575
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
ACH66458
UniProt:
B5FEM9
LinkDB
All DBs
Position
I:1659107..1660531
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AA seq
474 aa
AA seq
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MQQNNAPSFFFFDYETWGTSPSLDRPCQFAGVRTDEDFNIIGEPLVIYCRPPVDYLPSPE
ACLITGITPQTAVNKGLSEPEFIAKIHHELSQPNTCSLGYNNIRFDDEVSRYTLYRNFFE
PYGWSWQNGNSRWDLLDVMRAVYALRPEGINWPKDEEGRPSFKLENLSVANGIEHANAHD
AMADVIATIELAKKVKEAQPKMFNYLLSMRNKKKAATLIDIVEMTPLMHVSGMFGVDRGN
ISWIVPVAWHPTNNNAVITIDLALDPSVFLKLNVEELHQRMYTKRSDLGPDELPVPVKLV
HLNKCPVLAPAKTLTAENAANLNVDREACLRNLKVIRENPEIRQKLIELYSIEPNYEKST
NVDTLLYDGFFSHADKATIDIIRQSTPEQLIDFEPNVTDPRIKPLLFRYRARNFPHTLNE
AEQLRWHAHLQDYFQTHLPDYEASFENLYLESEGNDKKVAILKAVYNYVQQLIS
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgcaacaaaacaatgcacctagtttcttcttctttgattatgaaacatggggaactagc
ccttctcttgatcgaccgtgccaatttgctggtgtccgcactgatgaagatttcaatatt
atcggtgagcctttagttatttactgtcgtcctccggttgattaccttccctcacctgaa
gcgtgtttgattacaggtattacgccacaaacagccgttaataaaggactttctgaacca
gaatttattgccaaaattcatcatgaattatcacagcctaatacgtgttctttaggttat
aacaacattcgttttgatgatgaggtttctcgctacacactctatcgtaacttctttgaa
ccttacggttggagctggcaaaacggcaactctcgttgggatctattagatgtaatgcgt
gcggtttatgcacttcgccctgaaggcattaattggcctaaagatgaagaaggcagacca
agttttaaactggaaaacctgtctgttgccaatggcattgaacacgccaatgctcacgat
gccatggccgatgttatcgcgaccattgagttggctaaaaaagtaaaagaagcacagcca
aaaatgtttaactatttgctttctatgcgtaacaagaagaaagcagcgacattaatcgac
atagttgaaatgacaccacttatgcatgtttcaggcatgtttggtgtagatagaggtaac
atcagttggatagtgccagtggcttggcatccaaccaataacaacgcagttattactatt
gatttggctttagacccaagtgtttttcttaagttgaatgttgaagagctgcatcagcgt
atgtacaccaaacgttctgatcttggccctgatgagcttcctgttcctgttaaattagtg
catttaaataagtgccctgttcttgcgcctgcaaaaacattaactgctgaaaatgccgct
aacttgaatgttgaccgtgaagcgtgtttacgtaatcttaaagtgatacgtgaaaatcct
gagatcagacaaaaactgattgagttgtacagcattgagccaaactacgagaaatcaact
aatgtagatacgcttctttacgatggtttcttctctcatgctgataaagcgaccattgat
attattcgtcaatcaacgcctgaacagttaattgactttgaaccaaacgtgacagatcca
cgtatcaaaccactgttattccgatacagagcacgtaacttcccgcacacattaaatgaa
gctgagcaattaagatggcacgctcaccttcaagactattttcaaactcacttgccagat
tatgaagcgagttttgaaaatctataccttgagtccgaaggtaatgacaaaaaagtggct
attttaaaagccgtgtataactacgtacaacaattaatatcatga
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