Aliivibrio fischeri MJ11: VFMJ11_1833
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Entry
VFMJ11_1833 CDS
T00754
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vfm
Aliivibrio fischeri MJ11
Brite
KEGG Orthology (KO) [BR:
vfm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vfm03016
]
VFMJ11_1833 (rnd)
Enzymes [BR:
vfm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
VFMJ11_1833 (rnd)
Transfer RNA biogenesis [BR:
vfm03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VFMJ11_1833 (rnd)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ACH66871
UniProt:
B5FFP8
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All DBs
Position
I:complement(1946407..1947528)
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AA seq
373 aa
AA seq
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MEFEIVTQSQRLAEICQQASTKPFLMLDTEFVRTRTLYARLGLIQMFDGETLALVDPVEI
DDLTPLWDLLKNESVTKVLHACGEDLEVFQHYAGCMPTPMIDTQIMAAFLGYGLSTGFAK
LVSDYLGIELDKGEARTDWMARPLSDKQLHYAAADVHYLLPLFEKLQAELSQTQWEDAAY
QESTLAVKKREKQPDAEKAYLDIKNAWQLNPKQLAILKMAAKWRLEEARKRDLAVNFVVK
ELSLWKLARFGLRSKEQMLKEEFDPREVQRHGGKLLRFTYLADDLNPNEYPEQVTRLMDY
PGYKQIFKLLKDEVKIASDKSGLMPEFLASKKQLNQLLSWKWKKNAAPELKPDVLKGWRG
ELLEARFMSVIEK
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
gtggaatttgaaattgttacccagagccagcgtttagctgagatctgtcagcaggcaagc
acgaaaccatttttaatgttggataccgagtttgtaagaacacgaacgttatatgcacgt
ttaggtttaattcaaatgtttgatggtgagacattagcgcttgttgatccggttgagatt
gatgatttaacgcctctttgggatttattgaaaaacgaatcagtgacaaaagtacttcat
gcatgtggtgaagatttagaggtattccaacattacgctggttgtatgccaacgccgatg
attgatacacaaatcatggcggcatttttaggttatggactttctacgggattcgctaag
ctagtttctgactatttaggtattgaattagataaaggcgaagcaagaacggattggatg
gcacgtccattatcagacaaacaacttcactatgcagcggcagatgtgcattatttattg
ccattatttgaaaagcttcaagctgagttatctcaaactcaatgggaagatgcggcttat
caggaatcaacacttgcagttaaaaaacgtgaaaagcaacctgatgcagagaaggcctat
ttagatattaaaaatgcgtggcagcttaatcctaaacagttagctattttaaaaatggct
gcaaagtggcgtttagaagaagcaagaaagcgtgatttagcggttaactttgttgtaaaa
gagctgagtctttggaaactggctcgctttggacttcgtagtaaagagcaaatgcttaaa
gaagagtttgatccaagagaagtccaacgtcatggtggtaaattattacgttttacttat
ttagccgatgatttaaatccaaacgaatacccagagcaagtaacacgattaatggattac
cctggctataagcaaatctttaaattattaaaagatgaagtgaaaatcgcttcggataag
tcaggtttaatgcctgagtttttagcatcgaaaaaacagctaaatcaattattatcttgg
aaatggaaaaagaacgcagcaccagagctaaaacctgatgtattaaaagggtggcgtggt
gaactattagaagcgcgttttatgtctgtgatagagaaataa
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