Aliivibrio fischeri MJ11: VFMJ11_1875
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Entry
VFMJ11_1875 CDS
T00754
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vfm
Aliivibrio fischeri MJ11
Pathway
vfm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vfm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VFMJ11_1875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vfm03019
]
VFMJ11_1875
03009 Ribosome biogenesis [BR:
vfm03009
]
VFMJ11_1875
Enzymes [BR:
vfm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
VFMJ11_1875
Messenger RNA biogenesis [BR:
vfm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VFMJ11_1875
Ribosome biogenesis [BR:
vfm03009
]
Prokaryotic type
rRNA processing factors
VFMJ11_1875
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ACH65967
UniProt:
B5FG47
LinkDB
All DBs
Position
I:1992008..1994995
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AA seq
995 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGKITRIEPSLEAAFVDY
GADRHGFLPLKEIAKEYFPQGYTYQGRPNIKDVLKEGQEVIVQVEKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGEERTQLKAALSTLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWEAVKHASESNQAPFLIHQESNVIVRAIRDYLRRDIGEILIDSPKIFDRA
RQHIQLIRPDFLSRVKLYEGEVPLFSHYQIESQIESAFEREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMREAVRMDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLAL
SVLRLIEEESLKDNTTQVLAVVPVSIASYLLNEKRRSVQHIEKFHDVRVIIVPNSDMETP
HFEVIRIRDGEEQEMLSYLLPKKLEALREAESKEAPVVNIAPKKREEPVLQGFSAPTQAA
PVAKAQPEKKAEAKTEEKPGIISRFFKAIANFFSAPEVSEKTEKKVEEEKPAQPQRRNQN
RNNDRRRNNENGRNNRNNRRNGNDNRNENRRGKKQDDANATTTGKQAKANDNKPTKQPKV
RKEIAEQGLKLAADAQQAPAQNTEKQTEKREKTAQVKQRRQRRQLQKKVRTGKAVEAETD
AVVAAQVEAQQSNTEVNTEKNTERKEGQRRNRRSPRHLRASGQRRRRRDRRPVNPSRLSS
GVASPEMAMGKAYPDFARILEMKQAKQRQQEKFVDNETQAAQDKAPKVNVQIGGVAFPEM
AMGKVLLPYVEASVAPIKEAVQTPVVEEVKERTPAPVEVAVTEAPIATPVVNVVAEAPVE
PAVAEVNEVAVAEVAVEPVVEVEEVQPVVETKVAPKTQYKGHASSGMTKATGPTEIKEIT
VTAAEFRAERFTPKQAGSQTATSQASAAMAKTAGL
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaacccaaaaggaagagttgcgcgtcgcattagttgat
ggccaacgccttttcgatctagatatcgaaagtcctggtcacgaatctaaaaaagctaat
atttataaaggcaaaatcacacgtatcgaaccaagcttggaagcagctttcgttgattac
ggcgctgatcgccatggtttccttccccttaaggaaatcgcaaaagaatatttccctcaa
ggctacacatatcaaggtcgtccaaacattaaggacgttttgaaagaaggccaagaagtt
attgttcaagttgaaaaagaagagcgcggaaacaaaggcgcagctttaacaacgttcatc
tctcttgctggtagttaccttgttcttatgccaaacaaccctcgtgcaggcggtatttct
cgtcgtatcgaaggtgaagagcgcactcaattaaaagcagcattaagcacattagaacta
cctcaaggtatgggactaattgtacgtactgcaggtgtaggcaaatcagcagaagaactt
gagtgggatttaaatgttctactgaaccactgggaagcggttaaacacgcttctgaatca
aaccaagctcctttcctaattcaccaagaaagtaacgtaattgttcgcgcaattcgtgat
tacttacgtcgtgatattggcgaaatcttaattgatagcccgaaaatctttgatcgtgct
cgtcaacatattcaacttattcgtccagatttcttatctcgcgttaagctgtatgaaggc
gaagttcctctgtttagtcactaccaaattgaaagccaaattgaatcggcatttgagcgt
gaagttcgtcttccatctggtggctctattgttattgacccaacagaagctttaacgtca
attgatatcaactctgctcgtgcaacgaaaggtggtgatattgaagaaacggcactaaat
acaaaccttgaagctgctgacgaaatcgcacgtcaattacgtttacgtgacttaggtggt
ttagtagttatcgactttatcgacatgacaccagttcgtcatcaacgtgaagttgaaaac
cgtatgcgtgaagccgttcgtatggatcgcgctcgtgttcaaatcggtcgtatttctcgt
ttcggtcttctagaaatgtctcgccaacgcttaagcccgtctttagcagaagcaagccac
catatttgtcctcgttgtacgggtactggtgtggttcgtgataacgaatctctagctctg
tctgttctacgtttaattgaagaagaatcattaaaagacaatacaacacaagttcttgct
gttgttcctgtttctattgcttcttatttattgaatgaaaaacgtcgttcagttcaacac
attgaaaaattccatgatgttcgcgtaattattgttcctaactctgatatggaaacgcct
cactttgaagtgattcgtatccgtgatggtgaagagcaagagatgctgtcttaccttctt
cctaagaagctagaagcgctacgtgaagctgaatcaaaagaagctccagttgtaaatatt
gctcctaagaaacgtgaagaacctgttcttcaaggtttcagtgcaccaactcaggctgcg
ccagttgctaaagcacaaccagagaaaaaagcagaagcaaaaactgaagaaaaacctggc
attattagccgtttcttcaaagcaattgctaacttcttctcagctcctgaagtatcagag
aaaactgaaaagaaagttgaagaagagaaaccagctcaacctcaacgtcgtaatcaaaat
cgcaataatgaccgtcgccgtaataacgaaaatggtcgtaataaccgcaacaatcgtcgt
aatggtaacgataaccgtaacgaaaaccgtcgtggtaaaaagcaagacgatgcgaatgca
acaacaacaggtaagcaagctaaagcaaatgataataagccaactaaacagcctaaagta
cgcaaagaaattgcagaacaaggtcttaaattagcggctgatgctcaacaagctcctgca
caaaacactgaaaagcaaactgaaaaacgtgaaaaaacggctcaagtaaaacagcgtcgt
caacgtcgtcaattgcagaaaaaagtacgtacaggtaaagcggttgaagctgaaactgat
gcagttgtagcagcacaagttgaagctcaacaatcaaacactgaagtaaatactgagaaa
aacactgagcgtaaagaaggccaacgtcgtaaccgtcgttcacctcgtcaccttcgtgca
agcggtcaacgtcgccgtcgtcgcgatcgtcgccctgtaaacccttctcgtttatcttct
ggtgttgcatcacctgaaatggcaatgggcaaagcttatcctgatttcgcacgtattctg
gaaatgaagcaagcgaaacaacgccaacaagagaaattcgtagataacgaaactcaagcg
gctcaagataaagcaccaaaagttaacgttcaaatcggtggcgttgctttccctgaaatg
gctatgggtaaagtattacttccttatgttgaggcatctgttgctccaattaaagaagcg
gtacaaacacctgttgttgaagaagtgaaagagagaactccagcaccagttgaagttgct
gtgactgaagctccaattgctactcctgtagtaaacgtcgtagcagaagcacctgtcgaa
ccagcggtagcagaagtaaatgaagttgctgttgctgaagttgctgtagaacccgttgtt
gaagttgaagaagtacaacctgttgttgaaactaaggttgctccaaaaactcaatacaaa
ggacatgcttcttctggtatgacaaaagcaacaggtccaacagagattaaagaaatcact
gtgactgctgctgagttcagagcagaacgctttactccaaaacaagcgggtagccaaaca
gccacttctcaagcaagtgctgcgatggcaaaaactgccggtttataa
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