Aliivibrio fischeri MJ11: VFMJ11_2081
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Entry
VFMJ11_2081 CDS
T00754
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vfm
Aliivibrio fischeri MJ11
Pathway
vfm03030
DNA replication
vfm03430
Mismatch repair
vfm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VFMJ11_2081
03430 Mismatch repair
VFMJ11_2081
03440 Homologous recombination
VFMJ11_2081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vfm03032
]
VFMJ11_2081
03400 DNA repair and recombination proteins [BR:
vfm03400
]
VFMJ11_2081
Enzymes [BR:
vfm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VFMJ11_2081
DNA replication proteins [BR:
vfm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VFMJ11_2081
DNA repair and recombination proteins [BR:
vfm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VFMJ11_2081
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ACH65608
UniProt:
B5F9W1
LinkDB
All DBs
Position
I:complement(2203294..2206773)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSEPKFVHLRVHSDFSMVDGLSKVPPLVKNVGELGMPAMALTDFTNLCGLVKYYFAAHGA
GIKPIIGADFKVQSQEFGNELFNLTVLAKDNEGYKNLTLLISEAYQRGHVQHTPVMDKEW
LVNHKEGLILLSGGKSGDVGKALLKGNKELVNECVEFYQTHFPEHYYLELTRTGRADEES
YLHFAVELAEKENLPVVATNDVRFIKADDFDAHEIRVAIHDGFTLEDPRRPKLYSDQQYL
RSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPTEGMKIEDFLVKKSQEGL
ERRLAFLFPDEKVRLERRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP
GRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDKRDQVIEHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPSDPGMTLAKAFEAEPQ
LPELYNADEEVKALIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPLYCDADGHFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLEKEGKDPVRIESIPLDDQASFNLL
QNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREE
VSYPDATWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPEEM
AKQRGTFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTDKIIGLVDECFRMKLTVLPPDVNSGLYRFNVDEKGAIVYGIGAIKG
VGEGPIENIIEARNKGGHFKDLFDFCARIDTKKTNKRVVEKLIRAGALDRLGPHRAALMA
SLDDAMKAAGQHHQAESFGQSDMFGVLTQAPEEVEQAYIHVPKWPEKVWLEGERETLGLY
LTGHPVNAYIKELSRYTTWRLNDAHVTRRDQTVTVAGLVIAARVMTTKRGTRIGLMTLDD
RSGRMEVMLFSDALDRYADLLETDKIVLVSGQVSFDDFNGGLKMSAREVMSLGDAREKYA
RGLSVSVTESQINNQFFERFSQILEPNRAGTVPVNVYYQRADARVKLVLGTEWRVTPTDQ
LMDDLKSLLGEQQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacctaaattcgtacatttaagagttcatagtgacttctcaatggtggatggc
ttatctaaagttccgccattggtaaaaaatgtcggtgagcttggaatgcctgcgatggca
ttgactgactttaccaatttatgtggtttagttaagtattattttgctgctcatggagcg
ggaatcaaaccgattattggtgcggactttaaagttcaatcccaagagtttggtaatgaa
ttatttaatttaacggtacttgcaaaagataacgaaggatataaaaacctgacgttattg
atctctgaagcctatcaacgtggccatgttcagcacactccggtaatggacaaagagtgg
ttggttaatcataaagaagggttaatcctgctttctggtggtaaaagtggtgatgttggt
aaagcattattaaaagggaataaagaactcgttaatgagtgtgttgaattttatcaaacg
catttccctgaacattattatttagagttaacgcgtacaggtcgagcagatgaagagagt
tatcttcattttgcggttgaattagctgaaaaagaaaacttacctgttgtcgcaaccaat
gatgttcgttttataaaggccgatgattttgatgctcatgagattcgtgttgcgattcat
gatggctttacattagaagaccctcgccgacctaaattatacagtgatcaacaatactta
cgttctgaagaggaaatgtgtgaattattttcagacattccagaggcactagagaacagt
gttgaaatagcaaagcgttgtaatgtaacggtacgcttaggtgagtatttcctacctaat
ttccctactgaagggatgaaaattgaagactttctcgttaagaaatctcaagaaggctta
gaaagacgtttggcgtttttatttcctgatgagaaagtacgtttagaacgtcgacctgaa
tacgatgagcgtttacagattgaactcgatgtaatcaaccaaatgggattcccaggttac
ttcttgatcgtaatggagttcattcaatggtcaaaagataatgcaattcctgtaggtccg
ggtcgtggttcaggtgctggttctcttgttgcttatgcactagacatcacagaccttgat
cctcttgaatatgatcttctttttgaacgtttcttgaacccagaacgtgtatctatgccc
gatttcgatatcgacttttgtatggataaacgagatcaggttattgagcacgtagccgaa
atgtatggtcgtgatgcggtatctcaaattattacctttggtaccatggcggcaaaagcg
gtaattcgtgatgtagggcgagtgcttggacacccttacggctttgttgaccgcatttcg
aagttagttccatctgatcctggaatgacacttgctaaagcattcgaagccgaacctcaa
cttccagagctgtataatgcagatgaagaagtaaaagctctgatcgacatgtgccgtatt
cttgaaggttgtactcgaaacgcaggtaagcacgccggtggtgttgtaatatcaccaacg
acaatcacagactttgcgcctttgtattgcgatgctgatggtcatttccctgtaactcaa
tttgataagaatgacgttgaaactgctggtctagttaagtttgacttcttagggttaaga
acattaaccatcatagattgggcattagggttagttaaccctcgtcttgaaaaagaaggt
aaagatccagttcgaattgaatcgatacctttagatgatcaagcctcatttaatttatta
caaaattcagaaactactgcggtattccaattagaatctcgtggtatgaaagatctgatt
aaacgtcttcaaccggactgttttgaagacatcatcgcactagtagctcttttccgtccg
ggtccgcttcaatcaggcatggtagataacttcattgaccgtaaacatggtcgagaagaa
gtatcttaccctgatgcgacatggcaacatgaatcgttaaaagagacgttagaaccgact
tacggcattatcttgtatcaagaacaagttatgcagattgcacaaatcttagcaggctat
acgctaggtggagcggatatgcttcgtcgtgcaatgggtaagaaaaaaccagaagaaatg
gccaagcagcgtggtacttttaaagaaggtgctgagaaaaacggtgtagatggcgagctg
tcgatgaaaatcttcgacttagtagaaaaattcgcaggttatggttttaacaaatctcac
tcagcggcttatgctttagtttcttatcaaacattatggttaaaaacacattatccagca
gagtttatggcggcggtaatgacggcggatatggataacacggataagatcattggtctt
gttgatgaatgtttccgtatgaagttaaccgtgttaccaccggatgttaactctggtttg
tatcgttttaacgttgatgagaaaggcgcgattgtttacggcattggtgcgattaaaggg
gttggtgaaggcccaattgagaatattattgaagcaagaaacaaaggtggtcactttaaa
gacttatttgatttctgtgctcgtatcgatactaagaaaaccaataaacgtgtagttgaa
aaactgatccgtgctggtgcattagatagactaggaccacaccgagctgcattaatggca
tcattggatgatgcgatgaaagccgctggtcaacaccatcaagcggagtcttttggtcaa
tctgatatgtttggtgtattaactcaagcacctgaagaagtagaacaagcgtatattcac
gttcctaaatggccagagaaagtgtggctagagggggaaagagaaacattagggctttac
ttaactggacaccctgttaatgcgtatattaaagagttgtctcgatatacgacatggcgt
ttgaacgatgctcacgtaactcgacgcgatcaaacggtaacagttgcaggcttagtaata
gctgctagagtaatgaccactaaacgtgggactcgtattggtttaatgactttagacgac
agatctggccgaatggaagtgatgttgttctcagatgcgcttgatcgatacgcagattta
ctagaaactgataaaatagtccttgtttctggacaggtcagctttgatgatttcaatggt
gggcttaaaatgtctgcccgtgaagtgatgtcattgggcgatgcgcgcgaaaaatacgca
cgtgggttatccgtatcggtaaccgaatctcaaattaataaccaattttttgagcgcttt
agtcaaatactagagcctaaccgggcagggaccgttccggtcaacgtatattatcaacga
gcagatgctcgagtgaagttggtcttagggacagaatggcgagtaacgccaaccgaccaa
ctgatggatgatttaaagtcgttgcttggcgaacaacaagtcgagcttgaatttaactag
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