Aliivibrio fischeri MJ11: VFMJ11_2529
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Entry
VFMJ11_2529 CDS
T00754
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vfm
Aliivibrio fischeri MJ11
Pathway
vfm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vfm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VFMJ11_2529 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vfm03021
]
VFMJ11_2529 (rpoC)
03400 DNA repair and recombination proteins [BR:
vfm03400
]
VFMJ11_2529 (rpoC)
Enzymes [BR:
vfm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VFMJ11_2529 (rpoC)
Transcription machinery [BR:
vfm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VFMJ11_2529 (rpoC)
DNA repair and recombination proteins [BR:
vfm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VFMJ11_2529 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ACH66789
UniProt:
B5FC87
LinkDB
All DBs
Position
I:complement(2709316..2713521)
Genome browser
AA seq
1401 aa
AA seq
DB search
MKDLLKFLKAQHKTEEFDAIKIGLASPDQIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFESYVVTEPGMTDLERSQLLSEEEYLDKLEEFGDEFTAKM
GAEAIKDLLASMDMQAEIEDMREELETTNSETKRKKVTKRLKLVEAFVQSGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLEGRGLATTIKAAKKMVEREEAIVWDILDDVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLEGFAEAEKAYRTG
VAELHARVKVRITEVIRDENGIETRETKLVDTTVGRAMLWQIVPEGLPYSIINQKLGKKQ
ISNLLNEAYRTLGLKDTVVFADQIMYTGFAYAALSGASVGIDDMVIPDAKYTKVADAEEE
VKQIQEQYQSGLVTAGERYNKVIDIWAATNEQVAKEMMDNLSSETVLNRDGEEEQQESFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVNQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVHLDDCGTYEGVTMTPLIEGGDVKEPLHERVL
GRVVAEDVLKPGTDEILLPRNTLLDEKQCQIVEENSVDQIKVRSVVSCEADFGCCANCYG
RDLARGHMVNQGESVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAADNSIQVKTTGSIKL
HNAKHVTNSEGNLVITSRASELTVIDEHGRTKESYKLSYGTILNKKDGDAVNQGDKIAAW
DPHTMPIITEVQGQVQFVDMIDGVTITTQTDELTGLSSIVVLDAAERASAGKDMRPTVKL
VDANGNDIMIPGTEMPAQYFLPGKAIVNLADGGNVGIGETLARIPQASSGTKDITGGLPR
VADLFEARKPKEPAILAEHAGIVAFGKETKGKVRLLITRDDNGEVYEEMIHKHRQLNIFE
GDKVERGDVISDGPETPHDILRLRGIHAVTEYITNEVQEVYRLQGVKINDKHIETIVRQM
LRKCTITHSGDSTFLEGEQLEFANVTIANRQLEAEGKQPARFERDLLGITKASLATESFI
SAASFQETTRVLTEAAVSGKRDELRGLKENVIVGRLIPAGTGFAYHQERQKQKAVEQEGP
SAEQATDNLAALLNAGFSSEE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcacaacacaagactgaagaatttgatgcaatc
aaaatcggtcttgcttcacctgaccaaattcgttcatggtcttttggtgaagttaaaaag
ccagaaacaatcaactatcgtacctttaagccagaacgtgacggtcttttctgtgcacgt
atctttggcccagttaaagactacgaatgcttatgtggtaaatacaaacgccttaagcac
cgtggtgttatctgtgaaaaatgtggcgtagaagtaacgcaaactaaagttcgtcgtgac
cgtatgggccacatcgaattagcgtctccagttgcgcacatctggttcctgaagtcactg
ccgtctcgtattggtttgttaatggacattccactacgtgatatcgagcgtgtactttac
tttgaatcatatgtggttactgagccaggtatgactgatctagaacgcagccaacttctt
tctgaagaagaatatcttgataagctagaagagttcggtgacgaattcacagctaagatg
ggtgcggaagcgatcaaagatctgctagcgtctatggacatgcaagcagaaatcgaagac
atgcgtgaagagttagaaactactaactctgaaacaaaacgtaaaaaagtaactaagcgt
ctgaaactagtagaagctttcgttcaatctggtaacaacccagagtggatgattctaact
gttctaccagttcttccgccagatcttcgtcctctagtaccactagatggcggtcgtttt
gctacgtctgatctaaatgacttataccgtcgtgtgattaaccgtaacaaccgtttgaag
cgtctattagacttagctgcaccagatattatcgtacgtaacgaaaaacgtatgcttcaa
gagtctgttgatgcgctgcttgataacggtcgtcgtggtcgtgcgattacaggttctaac
aagcgtcctcttaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aacttgcttggtaaacgtgtagactactctggtcgttctgtaattacagtaggtccatac
cttcgtctacaccagtgtggtcttcctaagaagatggcacttgaactatttaaaccattt
atctacagcaaattagaaggccgtggtcttgctacgacaatcaaagctgctaagaagatg
gtagagcgtgaagaagcgatcgtttgggatatcctagatgacgtaattcgtgaacaccca
gtactgcttaaccgtgcgccgacacttcaccgtctaggtatccaagcgtttgaaccagta
ctaatcgaaggtaaagcaattcagcttcacccactagtgtgtgcggcatataacgccgac
ttcgatggtgaccagatggcggtacacgtaccactaactctggaagctcaattagaagca
cgtaccctaatgatgtcgacaaacaacattctgtcgccagcatcaggtgacccaatcatc
gtaccttctcaggacgttgtattaggtctgtactacatgacacgtgaaaaaattaacgct
aaaggcgaaggcatgtaccttgaaggttttgctgaagctgaaaaagcataccgtacaggt
gttgctgagctacacgctcgcgttaaagttcgtatcactgaagttattcgtgatgagaac
ggtattgagactcgtgaaactaaactggttgatacgactgttggtcgtgcaatgctatgg
caaatcgtgccagaaggtcttccttacagcatcattaaccagaagttaggtaagaagcaa
atctctaacctactaaacgaggcgtaccgtactcttggtcttaaagacactgtagtgttt
gctgaccaaatcatgtacaccggtttcgcatacgcagcattgtctggtgcgtctgttggt
atcgatgacatggttatccctgatgctaagtacacgaaagttgctgatgcagaagaagaa
gttaagcaaattcaagagcagtaccaatctggtcttgtaactgcgggcgaacgttacaac
aaagttatcgatatctgggcagcaacaaacgaacaagttgctaaagagatgatggataac
ctgtcttcagaaacagtgcttaaccgcgatggtgaagaagagcaacaagaatcgtttaac
agcgtttacatgatggccgactccggtgctcgtggttctgcagctcagattcgtcagcta
gcgggtatgcgtggtctgatggctaaaccagatggttcaatcattgaaacaccgatcacg
gcgaacttccgtgaaggtctaaacgtaaaccaatacttcatctcaacgcacggtgcgcgt
aaaggtcttgccgatacagcacttaaaactgcgaactcaggttacctgactcgtcgttta
gtagacgttgcacaagatgtagttgttcatttagatgactgtggtacatacgaaggtgtg
accatgactcctctaattgaaggtggtgacgttaaagaacctctacacgaacgtgttcta
ggtcgtgtggttgctgaagatgtattgaaaccaggtacagatgaaattcttcttccacgt
aacacacttcttgatgagaagcagtgtcaaatcgttgaagaaaactcagttgaccaaatt
aaagtacgttcagtagtaagttgtgaagctgacttcggttgttgtgcaaactgttacggt
cgtgaccttgctcgtggccacatggttaaccaaggtgagtcagttggtgttatcgctgct
caatcaatcggtgaacctggtacacagctaacgatgcgtacgttccacatcggtggtgcg
gcatctacagcggcagcagacaacagcattcaagttaagacgactggttcgatcaagctt
cataatgctaagcacgtaacaaatagcgaaggtaacttagttattacgtctcgtgcttct
gaattaacagttattgatgagcatggccgtactaaagagagctacaagctatcttacggt
actatcttgaataagaaagacggtgatgcagttaaccaaggcgataagatcgctgcttgg
gacccgcatacaatgccaatcatcactgaagtacaaggtcaagttcaattcgttgacatg
attgatggtgttacgatcacaactcaaactgatgagttaactggtctatcttcaatcgtt
gttcttgatgcggctgagcgtgcttctgctggtaaagacatgcgtccaacagtgaaactt
gttgatgcgaacggtaacgacatcatgatccctggtactgaaatgccagctcaatacttc
ctaccaggtaaggcgattgttaaccttgctgatggtggtaacgtaggtattggtgaaacg
ttagcgcgtattcctcaagcttcaagcggtactaaagatatcaccggtggtctaccacgc
gttgcggacttatttgaagctcgtaaacctaaagagccagcaattcttgctgagcacgca
ggtattgttgcgtttggtaaagagactaaaggtaaggttcgcttattgatcactcgtgac
gataacggcgaagtttatgaagaaatgattcataaacaccgtcaacttaacatctttgaa
ggtgataaagttgaacgtggtgacgttatctctgatggtccagaaactccacatgatatt
ctacgtttacgtggtattcatgcagtgactgaatacatcactaacgaagttcaagaagtt
tatcgcttacaaggcgttaagattaacgataagcacattgaaactatcgttcgtcaaatg
ctacgtaagtgtacgattacacattctggtgattctactttccttgaaggtgagcaacta
gaattcgctaacgtaacgattgcaaaccgtcagcttgaagctgaaggcaagcaacctgca
cgtttcgagcgtgatctactaggtattactaaagcgtctcttgctactgagtcgttcatc
tctgctgcatcgttccaagaaacgacgcgtgtacttactgaagcagctgtttctggtaag
cgtgatgaactacgtggtctgaaagaaaacgtaatcgttggtcgtctaattccagcgggt
acaggtttcgcataccaccaagaacgtcaaaagcaaaaagctgtggagcaagaaggtcca
tcagctgagcaagcgactgataacttagcggcactattaaatgcaggtttctcttctgaa
gagtaa
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