Aliivibrio fischeri MJ11: VFMJ11_A0187
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Entry
VFMJ11_A0187 CDS
T00754
Name
(GenBank) putative ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vfm
Aliivibrio fischeri MJ11
Pathway
vfm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vfm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VFMJ11_A0187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vfm03019
]
VFMJ11_A0187
Enzymes [BR:
vfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VFMJ11_A0187
Messenger RNA biogenesis [BR:
vfm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VFMJ11_A0187
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
CMS1
HI1480
ERCC3_RAD25_C
AAA_22
DsrH
DUF8086
Motif
Other DBs
NCBI-ProteinID:
ACH64399
UniProt:
B5ESS6
LinkDB
All DBs
Position
II:211103..212593
Genome browser
AA seq
496 aa
AA seq
DB search
MGFTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLL
ERLSNGPKRKFNQVRALVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRL
RRGVDVLVATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILAKLPKNRQ
NLLFSATFSDEIRQLAKGLVKDPVEISVAKRNTTAETVEQSVYVMDKGRKPKVLTKLIKD
NDWKQVLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVLVAT
DIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEAKELFAIER
LIQKVLPRHVLEGFEPVNKVPESKLDTRPIKPKKPKKTKAPRVEHKDGQRSGENRNGNKQ
GQKPAAKRAPTNNPSSKKEGTGSDKKKRPFSGKPKTKGTGENRGNGSNFGKSKSTPKSDV
KPRRQGPRPARKPKVN
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgggttttacctctctgggcttatctgcccctattttaaaagctgtagaagaacaaggt
tatagcacgccttcaccaattcaattacaagcaataccagctgtaattgaaggcaaggat
gttatggcggctgcacagacagggacgggtaaaacagcaggctttacattacctcttttg
gagcgtttatcgaatggtccaaagcgtaagtttaaccaagtacgtgcgttagtgttaacg
ccaacacgtgagttagccgcacaagtacacgaaagtgtagagaaatacagcaagaacttg
ccactgacttctgatgttgtttttggtggtgtaaaagtgaatccacaaatgcaacgctta
cgtcgtggtgttgatgttttggtcgcaacgccgggtcgtttactggatcttgccaatcaa
aatgcgattaagtttgatcaattagaaatacttgttctggatgaagctgaccgtatgtta
gatatgggctttattcatgacatcaaaaaaatcttagctaagcttcctaaaaaccgtcaa
aacttgcttttttctgcaacgttttcagatgagatccgtcaattagcaaaagggctagtg
aaagatcctgttgagatttcagtcgctaaacgtaacacaacggctgaaacagtagagcaa
tcagtttatgtaatggataaaggccgtaaacctaaagtgcttactaaactgattaaagac
aatgattggaagcaagttttagtctttagtaaaaccaagcatggtgcaaaccgccttgct
aaaacgctagaagaaaagggcgtaagtgcggcagccattcatggaaataaaagccaaggt
gcacgtacaaaagcattagctaactttaagagtgggcaagtacgagtacttgtagcgacg
gatattgcagcgcgtggtttggatatcgagcaactacctcaagtgattaacgttgattta
ccaaaagtacctgaagattatgttcaccgtattggtcgtacaggtcgtgctggtgcaacg
ggtaaagccatttcttttgtgagcgaagatgaagcgaaagaattgtttgctattgagcgc
ttgattcaaaaagtattgcctcgtcatgtgttagagggttttgagcccgttaataaagta
ccagaatcaaaactggatactcgcccgattaaaccgaaaaaacctaagaagacaaaagca
ccaagagttgaacataaagatggtcaacgctcaggtgaaaatcgtaatggcaataaacaa
ggccaaaagccagcggctaaacgtgctcctacaaataatccatcttctaagaaagaaggt
acgggttcggataagaaaaaacgtccattttctggtaaacctaaaacgaaaggaactggc
gaaaatcgcggtaatggcagtaactttggtaaatcaaaatctactccaaaatcggatgta
aaaccacgtcgtcaaggtccacgaccagcacgtaaaccaaaagtaaactga
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