Aliivibrio fischeri MJ11: VFMJ11_A0420
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Entry
VFMJ11_A0420 CDS
T00754
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vfm
Aliivibrio fischeri MJ11
Brite
KEGG Orthology (KO) [BR:
vfm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vfm03016
]
VFMJ11_A0420 (rnb)
Enzymes [BR:
vfm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VFMJ11_A0420 (rnb)
Transfer RNA biogenesis [BR:
vfm03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VFMJ11_A0420 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
Rho_RNA_bind
CSD
Motif
Other DBs
NCBI-ProteinID:
ACH64515
UniProt:
B5ETF7
LinkDB
All DBs
Position
II:complement(476966..478996)
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AA seq
676 aa
AA seq
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MFQDNPLLAQLKQQIQEKLPKKEGTIKATERGFGFLESDDKKKSIFIPPAQMKKVMHGDK
VVALIRTENEKEQAEPDQLIEQSITRFIGRIQMFKKRLQVMPDHPSLKNAIKAKTRKGVN
PETLKEGDWVVAELTQHPLKGDQGFQCDITHKITDSDDKIAPWWVTLAQNDLPNSEPEGI
EHWEIKDDADLVRVDMTATPFVTIDGESTKDMDDALYIKKLENGSFELTIAIADPTAYIT
PDDSMDKVARERGYTIYLPGRNIPMLPRDLSDELCSLIEGQERPALCCTVLVDANGNIQE
ESINFFAATIKSHARLAYDHVSDFLETGSCDKWQPNDTIAQVVTELYEFAQVRTTWRETH
AVIFPDRPDYRFELSEDNDVIAIHADMRRTANKLVEEAMVTANICAGKTLRAAFNMGVFN
SHAGIKSDKLKDVVEIVNQLDGVEFTEEQIATLEGFSELRRLLGKQPTSYLDARIRKFQT
YSETGNEPLPHYAMGLDIYATWTSPIRKYSDMINHRMLKAHILGKEPVQRPDDIVGEELA
LSRRFHRMAERNVSDWLYCRTLASEVEKETKFTAEIFDINRAGMRVRLIENGAAAFIPGS
LIVDNKERIECNADQGIISIDKHETFKLGDQLPVVLAEVKEDTRNMVAKPLQAFPAPESE
EAPVVESEDKTTNANA
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccactacttgcgcaattgaagcagcaaatacaagaaaaactccca
aaaaaagaaggcaccattaaagcaactgaacgtggctttggcttcttagaatcagatgat
aagaaaaaaagcatctttatcccaccagcacaaatgaaaaaagttatgcatggtgacaaa
gtagtggctcttattcgtacagagaatgaaaaagagcaagcagaaccggatcaattaatc
gaacaatcaattacacgattcattggccgtattcaaatgtttaaaaaacgtctacaagtt
atgcctgatcaccctagtttaaaaaatgctattaaggcaaagactcgcaaaggcgtaaac
cctgagacacttaaagaaggtgactgggttgttgcagagttaactcaacacccattaaaa
ggggatcaaggctttcaatgtgatattacccataaaatcactgacagcgatgacaaaatt
gcaccttggtgggtaactctagctcaaaacgatttacctaactcagagcctgagggtatt
gagcattgggaaattaaagacgacgctgatttagttcgtgtcgatatgacagcaacccca
ttcgtaactattgatggcgaatcaaccaaagatatggatgatgcgttatatatcaaaaag
cttgaaaatggttcatttgaactaactattgctattgcagatcctaccgcttatatcaca
ccagatgacagtatggataaagtggcacgtgaacgtggttatacgatctacctaccgggt
cgtaatattcctatgttacctcgtgatttaagtgatgagttatgttctttaattgaaggc
caagaacgccctgctctttgctgtacagtactggttgatgctaacggcaatatccaagaa
gaaagcatcaacttttttgcagcaacgatcaaatcacatgctcgtttagcttatgaccat
gtttctgatttcttagaaacgggctcttgtgataaatggcaaccaaatgacaccatcgca
caagtcgttactgaactgtatgagtttgctcaagtacgtacaacttggagagaaactcac
gcggttattttcccagatcgtcctgattaccgttttgaattaagcgaagacaacgatgtt
atcgctatccatgctgatatgcgccgcacagcgaacaagcttgttgaagaagcaatggta
acggcaaacatttgtgcaggtaaaacattacgtgccgcatttaatatgggcgtatttaac
tctcatgctggtatcaaatctgacaaattaaaagacgttgttgaaattgttaatcaatta
gacggtgtcgaatttacggaagaacaaattgctactcttgaaggctttagtgaattacgt
cgcctattaggaaagcaacctacgtcttatttagatgctcgtattcgcaaattccaaacc
tacagcgaaacaggtaatgaaccactacctcactatgctatgggattagatatttacgca
acatggacttctccaatccgtaaatacagcgatatgatcaaccatcgtatgcttaaagct
catattttaggaaaagagcctgttcaacgtcctgatgatatcgttggagaagaactagca
cttagccgccgcttccatcgtatggcagaacgaaatgtaagtgattggttatattgtcga
acattagcatcagaagttgaaaaagaaactaagttcacagcggaaatctttgatatcaac
cgtgcaggtatgcgtgtgcgtttaattgaaaacggcgcagcagcatttattcctggttca
ttaatcgttgataataaagaacgtatcgaatgtaatgctgaccaaggtattatctccatt
gataaacatgagacgtttaaacttggcgatcaacttcctgtcgtattagctgaagtaaaa
gaagacactcgtaatatggttgctaaaccacttcaggcttttcctgctcctgaatcagag
gaagcaccagttgttgaaagtgaagataaaacaacaaatgcaaacgcataa
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