Aliivibrio fischeri MJ11: VFMJ11_A1251
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Entry
VFMJ11_A1251 CDS
T00754
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vfm
Aliivibrio fischeri MJ11
Pathway
vfm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vfm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VFMJ11_A1251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vfm03019
]
VFMJ11_A1251
03400 DNA repair and recombination proteins [BR:
vfm03400
]
VFMJ11_A1251
Enzymes [BR:
vfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VFMJ11_A1251
Messenger RNA biogenesis [BR:
vfm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VFMJ11_A1251
DNA repair and recombination proteins [BR:
vfm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VFMJ11_A1251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
Pex14_N
SNF2-rel_dom
NADH_4Fe-4S
Cpf1_PI-like
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACH63997
UniProt:
B5EVS8
LinkDB
All DBs
Position
II:1386253..1388169
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AA seq
638 aa
AA seq
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MYQQTLKETFGFDSLRGGQQQVIEKVLNGHSSAAIFPTGSGKSLCYQLPALILPNLTLVI
SPLLALMKDQIAFLKSKGIAAASIDSTQTREETQAILQGVRNGEIKILMISVERLKNERF
RQFIAQINISLLVVDEAHCISEWGHNFRPDYLKLPQDREALNIPQVLLLTATATPAVIED
MSKKFNIAQDDIVITGFYRPNLDISIIPVEEEQKRSALFATLKQRPDQPSIVYVTLQQTA
ENVAQWLQSNGIQAKAYHAGLKNDVRETIQHQFMHGEINCIVATIAFGMGVDKSDIRQVI
HFDLPKSIENYSQEIGRAGRDGLPSFCTVLANTSGLNVLENFVYGDTPDREAIQYVLDDI
YQANETWETQLLRLSKDSNVRQLPLKTLLVYLELKKIIQAKYSYYADYRFKTLIPINDII
AKFQTERQQFVSTIFQCSPKAKTWHTVDFDALWMGFRGERKRVIAALDYFNEQGWIELES
KQMTEVYQVLNKVESTHVLSQEQHQLFKNKEQSEINRIHAMLDFFETKSCLSHALAHYFA
DFNAPEKCGHCSACRSEAAVLPRSSPHFIADDENVKAWCQELQNSSKEPLANAVFARFLC
GIPTPLTSKIRANKMQGFGKFESQPFFEVLELVGKLNG
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgtatcaacaaacgttaaaagaaacatttggctttgattctctaagaggcggtcaacag
caagtgattgagaaagtgctaaatggtcactcatctgctgctatttttccaactggatca
ggtaagtctctttgttaccagctgcctgcgcttattttaccaaaccttaccttagttatt
tccccacttttggctttaatgaaagaccaaatcgcttttttaaaaagtaaaggtattgct
gctgcatcaatcgattccacgcaaacaagagaagaaactcaagccattttacaaggcgta
agaaacggtgaaattaaaatattaatgatctctgttgaacgtttaaaaaatgaacgcttt
cgtcagtttattgctcaaattaatatttcattattagtggtggatgaagcgcactgtatt
tcggaatggggtcacaatttcagacccgattacctaaaactaccacaggatcgcgaagct
ctgaatattcctcaggtattacttctaacagctacagcaacgcctgcggttattgaagat
atgagtaaaaaattcaatattgctcaagatgatattgtgatcacaggcttctaccgtcca
aatctagatatatctatcattcctgttgaagaagagcaaaaacgctcagcgctatttgca
acattaaaacaacgaccagaccaaccaagtattgtatatgtcacactacagcaaaccgct
gaaaacgttgctcagtggctacaaagtaatggtattcaagctaaggcttaccatgcaggt
ttaaaaaatgacgtccgtgaaacgattcaacatcaatttatgcacggtgaaataaattgt
atcgtagccaccatagcatttggtatgggggtcgataaatcggatattcgacaagtcatt
cattttgatttacctaaatctattgaaaactattcacaagaaattggtcgtgcagggcgt
gatggtttaccttctttttgtactgtattagccaacacctctggcttaaatgtgttagag
aactttgtgtatggcgatacaccagacagagaagcaatccaatatgtgctagatgatatt
taccaagcaaatgaaacgtgggaaacacaactactgcgtttatctaaagacagcaatgtt
cgtcaattacccttaaaaacattactcgtttatttagaattgaaaaaaatcattcaagct
aaatacagctactatgccgattatcgttttaaaacacttattcctataaacgatattatt
gctaagtttcaaacggaacgtcagcaattcgtatcaactatttttcagtgttcaccaaaa
gcaaaaacctggcacacagtcgattttgatgccttatggatgggattccgaggtgagcga
aaacgtgtgatcgctgcattagactattttaatgaacaaggttggatagagcttgaaagt
aagcaaatgactgaggtttatcaggttttaaacaaagttgaaagtacgcatgttctctct
caagagcagcatcaactattcaaaaataaagaacagagtgaaataaatcgaattcatgcc
atgttggatttttttgaaaccaaaagctgtttaagccatgcccttgctcattactttgct
gattttaatgcgccagaaaaatgtggtcactgctctgcttgtcgatctgaagctgccgtt
ttgcctcgcagttcgcctcactttattgctgatgatgaaaatgtaaaagcatggtgtcaa
gaacttcaaaacagcagcaaagagccattagcaaatgccgtttttgcacgttttttatgt
ggcattccaaccccattaaccagcaaaattagagcaaataaaatgcaaggatttgggaag
tttgaatctcagcctttttttgaagtacttgaattagtcggaaaattgaacggataa
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