KEGG   Aliivibrio fischeri MJ11: VFMJ11_B0055
Entry
VFMJ11_B0055      CDS       T00754                                 
Name
(GenBank) type I site-specific deoxyribonuclease
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
vfm  Aliivibrio fischeri MJ11
Brite
KEGG Orthology (KO) [BR:vfm00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:vfm02048]
    VFMJ11_B0055
Enzymes [BR:vfm01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     VFMJ11_B0055
Prokaryotic defense system [BR:vfm02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   VFMJ11_B0055
SSDB
Motif
Pfam: T1RH-like_C SWI2_SNF2 HSDR_N T1R_D3-like ResIII Thr_synth_N Fer4_19
Other DBs
NCBI-ProteinID: ACH64739
UniProt: B5EVZ8
LinkDB
Position
pMJ100:47899..50985
AA seq 1028 aa
MKITEEMLEDHCMVWFSNLGYQTLHGGDLEPTGKAPERQSLSDVVLKPRLKKSLMKINPH
LPEDCIDTAIDTLLTTVPSVAHANHTFHRQLIDGIQVEYEDSEGRPKGDKVYLVDFTNQN
NDWLALRQFSVDGVTNGEKDNRRPDIVVFLNGLPISVLELKSPADEKADVWKAYNQIQTY
KNVLRDLFVFNESVIISDGTEAYIGSLTADRDRFTPWRTIDGSRDDSEDTLALEVMVRGF
FNQELLLDYLQYFISFECDNEKVIKKIAGYHQFHGVRAAIESTIRATRHDGDQRCGVFWH
TQGSGKSLSMGFYSAKLMAAPEMRNPTIVVVTDRNDLDEQLFETFSINAELLRETPIQAK
DRHHLKELLDNRQSGGIFFTTMQKFSPDEGESRYPALTERNNIVVMADEAHRSQYGLKAR
VDSKTGEMKYGYAQHLRDALPNAGFIGFTGTPVEMEDRDTRVVFGQDVSVYDIEQAQRDG
ATKKLYYESRLIKLDMDKSIKEEDLDQAVDDLVAEYDEDDQSRTKAKNAALEALVCAEDR
IDRLARDLLTHFGKREEVTLTKAMAVCISREACVQLYDKLRELKPEWHDEDPEKGCMKVI
MTGTSSDPEKYQKHIHKKPIQKKIAKRIKDPDSELKLVIVCDMWLTGFDAPCLNTMYIDK
PLKGHNLMQAIARVNRVFRDKEGGLIVDYLGIAPELRSAVRNYTASGQGEPTIDLAQALE
VTMTKLDVCRGIMHGFDYSDYKTNTLGLLAKAMNHILSLEDGKKRFDKAALSLSKAFSLC
SCMDEAKDIKEEIAFFETLRAAIKKTTTSKQRMSDENVQTALRQVVSESIVSGDIVDVFE
SAGLNKPNISILDDDFLAEVEKIEHKNLAVEMLKKLIQDEIKTRTVKNAVAYKTFSEMLR
NSLDKYRNRSVETSVVIEELIKLAKELRDSADRGDDLDLTKEELAFFDALLANESAKEAM
KQEDILFIARELAAEIRKSAQPDWTKRKNLRSRMRIKIKQILKRTGYPPDCQEDAVELVL
QQAELVNP
NT seq 3087 nt   +upstreamnt  +downstreamnt
atgaaaataacagaagaaatgctagaagaccattgtatggtctggtttagtaaccttggc
taccaaactcttcatggcggagacttagaacccacgggtaaagcgccagaacgccaatcg
ctttctgatgtggttttaaaaccacgtctcaaaaagtctttaatgaaaatcaaccctcac
ctacctgaagactgcatcgataccgctatcgatacacttcttactactgtaccgtcagta
gctcatgcaaaccatacgtttcatcgtcaactgattgatggcattcaagtagagtacgaa
gacagcgaaggacgtcctaaaggcgataaagtctacttagtcgattttacgaaccagaat
aacgattggttagcattgcgccagttctccgttgatggtgtcacaaatggtgaaaaagat
aatcgccgtccagatatcgttgtattcctgaatggtcttccaatatctgttcttgagctt
aaaagcccagcagatgaaaaagccgatgtatggaaagcgtacaatcaaattcaaacgtac
aagaacgtcctaagagatctgtttgtatttaatgagtcagtcatcatatctgatggcact
gaggcttacattggctctctgaccgcagatagagaccgtttcacaccttggcgtaccatt
gatggctctcgtgatgactctgaagatacgcttgcgcttgaagtgatggtacgaggcttc
tttaatcaagaattgctcttagattacttgcaatactttatctcgtttgaatgtgataac
gaaaaagtaattaaaaagattgcaggctatcaccagttccacggtgttcgcgctgcgatt
gaaagcacgatccgagcaacgagacacgatggtgatcagcgttgcggtgtgttctggcat
acccaaggttcaggtaaatccttatcaatgggcttctacagtgcgaagctaatggctgcg
ccagaaatgcgcaacccaacgattgtggtcgtaacagaccgtaatgaccttgatgagcag
ttgtttgaaacattcagcatcaatgctgagttactacgtgaaacaccaattcaagcaaaa
gatcgtcaccacctaaaagagctgctagataacagacaatcaggtggtatcttttttact
acaatgcaaaagttctctcctgatgagggtgaaagtcgctaccctgcgcttacagaacga
aataacattgtggtaatggctgatgaagctcaccgttcacaatacggcttaaaagcgcgt
gtagacagtaaaacaggtgagatgaagtatggttatgctcagcatttaagagatgcactt
ccaaacgctggttttatcggatttacagggactccagttgaaatggaagaccgtgatacc
cgtgttgtttttggtcaagatgtatcggtttacgatattgaacaagcgcaacgtgacggt
gctacgaagaagctgtattacgaaagccgcttaatcaaattagatatggataaaagcatt
aaagaagaagacttagatcaagcggtagatgatctcgtcgctgaatatgatgaagatgac
caatctagaaccaaagctaaaaatgcagctcttgaagcgttagtttgcgccgaagaccgt
attgaccgtttagcacgagacttactgactcactttggaaagcgtgaagaagtaacgcta
acaaaggcgatggcggtgtgtattagccgtgaagcctgtgttcagttatacgataaactg
cgcgaattaaaacctgaatggcatgatgaggatccagagaagggatgcatgaaggtcatt
atgactggtacatcatccgatcctgaaaagtatcaaaaacacatccacaaaaagcctatt
cagaagaaaatagctaagcgtattaaggatccagatagcgagcttaagttagttatcgtg
tgtgacatgtggctaacaggttttgatgcaccttgcttaaatacaatgtatatcgacaaa
ccgctgaaaggtcataacttgatgcaggcgattgctcgtgtaaatcgtgtattccgcgac
aaagaaggtggtttgattgtggactatcttggtatcgctcctgagctaagaagcgcagtt
cgtaattatacagcaagtggtcaaggtgagcctacaattgatttagcacaagctcttgaa
gtgacgatgactaagttagatgtatgccgtgggatcatgcacggctttgattacagcgat
tacaagaccaatacgttaggcttgctggctaaagcaatgaaccatattctgagcctagaa
gatggaaaaaaacgctttgataaagcagctctatcgttgtctaaagcattcagtttatgt
agttgcatggatgaagcgaaagacatcaaagaagaaatcgcattctttgaaacattaaga
gcagctatcaagaagacaacgacatcaaagcaacgtatgtctgatgaaaatgtgcagaca
gcacttcgccaagtagtttctgagtctattgtgtctggtgatattgttgatgtatttgaa
tcggcaggattgaataagccaaatatcagtatccttgatgatgatttccttgctgaagtt
gaaaaaattgagcacaaaaatcttgccgtagagatgcttaaaaagctaatccaagatgaa
ataaaaactcgtaccgtgaagaatgctgtagcatacaaaacattctctgagatgcttaga
aattctttagacaagtatcgcaaccgctcagttgaaacgagtgttgtaattgaagaatta
attaaactggctaaagaacttcgagattcggctgatcgtggtgatgatcttgatttaacg
aaagaggagcttgctttctttgatgccctacttgcaaatgaatccgctaaagaggcgatg
aagcaagaagatatcttattcattgcacgagagttagcagcagagattcgtaaaagtgct
caacctgattggactaagcgcaagaacctacggtcccgtatgagaattaagatcaagcaa
attctaaagagaaccggctacccacctgactgccaagaagatgctgttgaacttgttcta
cagcaagcggaactggttaatccttaa

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