Aliivibrio fischeri MJ11: VFMJ11_B0141
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Entry
VFMJ11_B0141 CDS
T00754
Name
(GenBank) ATP-dependent DNA helicase Rep
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vfm
Aliivibrio fischeri MJ11
Pathway
vfm03420
Nucleotide excision repair
vfm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VFMJ11_B0141
03430 Mismatch repair
VFMJ11_B0141
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vfm03400
]
VFMJ11_B0141
Enzymes [BR:
vfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VFMJ11_B0141
DNA repair and recombination proteins [BR:
vfm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VFMJ11_B0141
MMR (mismatch excision repair)
Other MMR factors
VFMJ11_B0141
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
AAA_12
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
ACH64639
UniProt:
B5EW84
LinkDB
All DBs
Position
pMJ100:133863..136151
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AA seq
762 aa
AA seq
DB search
MDVNKLLNGMTERQKEGVLHHGTPTVITAGAGAGKTAVLTKRIAKAIYHSGNPESVVAIT
FTKDAANEMKERVNNLVGAGLGNRAVISTFHSFAMNRILRPNWGHPFLRSLGCVGKTLSI
EFSNISIDHIRKNALMTGLSSSQRNHLECFFEKPEEEFASWLSLTRSYGFTPMTYFNEIS
KQANFPYSSIKELSIDSNEVVIKDAEPSIYSNIYFLKAWMYYDSTLRERESIDFDQVLVF
SMLLIEKEKDIRLKLKQRYQFFEVDEFQDTNVCQYRFLLALVGDGKNLAMFGDIKQAIYS
FRGSNCYLMANINKQFSNLKITNLPDNFRSTHNVVAAGNAIADCMKIQLVSEHMIGHKES
QVMPFVTCYENEDQEAHNIVNKILALKADGIAPQNIGILYRFNKLGQNMENYLISRGVSY
RRIGNDKGLYEEPDIRDIVIYLHLIFNPYSIKAIRCFFASFIEFGVTTEALNSAIKSFQG
RGDKRINNHQLLSFIVERGICKPSTKEHLSRVLKIIMHCSGLSSRITSFDSYCRSVNEQY
TNMPSDHCKAVEKRLQEQFWGAVRDFVKELSTIYVEQYKYMFYSQADQQKRLKMSRELAT
KHYHLIFNACYDEELSETNLTQYICTRPLLDKVTKKDDEENTTDIELMTIHASKGLEKEA
IFIIGCSEESWWKESDIKAGTDKYEEELRLFYVALTRAIEHLFFTYSATRSFRNTEQPCN
PLRFLFLLKNTAIYRSMLRGKETVFDDMDTLSIQIQKDNSDE
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
ttggacgtgaataaattattaaatgggatgacggaaagacaaaaagaaggtgtattgcat
catggtacaccgactgtcattacggctggagcaggagcaggaaaaacagcggtcttaact
aaacgtattgcaaaggctatctatcattcaggtaatccagaatcagtagttgcaataaca
ttcactaaagatgcagcaaatgaaatgaaagagagagttaataaccttgtaggggcaggg
cttggcaatcgtgcggtcatttctacttttcatagttttgcaatgaatcgaattttaaga
ccgaattgggggcatccttttttgcgttcgctaggttgtgttggtaaaacactatcgatt
gaattttcaaatatatcaattgatcacatacgtaaaaatgcgctaatgacaggtctatct
tcttcacaacgcaatcacctggagtgtttttttgaaaaaccagaggaagagtttgctagc
tggctaagcttaacgcgctcttatggttttacaccaatgacctattttaatgaaatatca
aagcaagctaattttccatattcatcaattaaagaattaagcattgatagtaatgaagtg
gttattaaagatgctgagccaagtatttattcaaatatatattttttaaaggcgtggatg
tattacgacagtacattacgcgagcgtgagtcaatcgattttgatcaagttttagttttt
tcgatgctacttatcgaaaaagaaaaagatatcagattaaagttaaagcaacgctatcaa
ttctttgaagtggatgagtttcaagatacaaatgtttgccaatatcgttttttattagcc
ctagtgggtgatggtaaaaacttagccatgtttggtgatattaagcaagctatctattca
tttcgaggtagcaattgttatcttatggccaatataaataaacagttctcgaaccttaaa
attactaatcttcccgataattttagatctactcataatgtggtggctgctggaaatgcg
atagcggattgtatgaaaatacagttggtaagcgagcatatgattggccataaagaatca
caggttatgccctttgttacttgttatgaaaatgaagaccaagaagctcataatatcgta
aataagatactagcacttaaagctgatggtatagctccacagaatatagggatcttgtat
cgctttaacaaacttggtcagaatatggaaaactatcttatttcacgaggagtttcttat
cgaagaattggtaatgataagggcttgtatgaagaacctgatattcgtgacattgttatt
tatttacatcttatttttaacccttactcgattaaagctatccgatgtttttttgctagc
tttattgaatttggagtcacaactgaagctttgaactcagctataaagtcgtttcaggga
cgtggtgataagcgaattaataatcatcaacttttatcatttattgttgaacgaggaata
tgtaaaccttcaactaaagaacatttgtcaagagtgttgaaaattatcatgcattgttct
ggattatcctctcgaataacgagctttgacagctattgtcgcagtgtaaacgagcaatac
actaatatgcctagtgaccactgtaaagcggttgaaaaacgcttacaggagcaattttgg
ggtgcagttcgtgatttcgtaaaagagctaagtactatttatgttgaacaatacaaatac
atgttttattcacaagcagatcagcaaaagcgtttgaaaatgtcacgggaattagcgacg
aaacattaccatttaatttttaatgcatgttatgacgaagagttatctgaaactaacctt
actcaatatatttgcactcgaccattacttgataaagttactaaaaaagatgacgaagaa
aatacaacagatatagagctaatgacgattcatgcgagtaaaggtctagaaaaagaagcc
atttttattattggttgttccgaagaaagttggtggaaagaatcagatattaaagctgga
accgataaatatgaagaggagttaaggctcttttatgtcgcactgacacgagcaatagag
cacttattctttacttattcagctactcgcagctttagaaatacagagcaaccatgtaac
cctttacgttttttatttctattaaaaaatacggctatttatcgctcaatgttgagaggt
aaagaaactgtatttgatgatatggatacattatcaatacaaatacaaaaggataattca
gatgagtaa
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