Vibrio furnissii: vfu_A00060
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Entry
vfu_A00060 CDS
T01680
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vfu
Vibrio furnissii
Pathway
vfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
vfu_A00060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vfu03019
]
vfu_A00060
Enzymes [BR:
vfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
vfu_A00060
Messenger RNA biogenesis [BR:
vfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
vfu_A00060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
DUF1414
Motif
Other DBs
NCBI-ProteinID:
ADT85298
LinkDB
All DBs
Position
1:66847..68154
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AA seq
435 aa
AA seq
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MKKTHITEQKFADFGLHPQVVEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKT
LAFLTATFHHLLTTPEIEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYG
GESYDKQLAKLQDGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMHNPEHVVVEPTQKTGHRIKEELFYPSN
EHKMALLQTLLEEEWPDRAIVFANTKHRCEQIWGHLAADGHRVGLLNGDVPQKKRERILE
QFTKGELDVLVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFA
CEEYAINLPGIEEYIEHAIPTSEYDPSALLTDLPKALTMRSSQQRRTNTGGQRNNGNRKS
QRRPRAPRPRQNKDS
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgcatatcacagagcaaaagttcgccgacttcggtttacatccgcaagtt
gttgaaggattggagaaaaaagggttcgaatactgcacccctatccaagccttggcgttg
ccggtactgctcaccggccaagacatcgcaggccaggcccaaacggggactggtaaaacg
ctcgcgtttcttactgctactttccaccatttattgactacgccagaaattgaaggtcgt
cagccaacgcaacctcgtgcgatcattatggcgccgacccgtgaattggcgattcagatc
tataacgatgccgaacctctgattgccagcaccggtattaaagcagcccttgcctacggc
ggtgaaagctacgacaaacagttggcaaaactgcaagacggcgtggatgtgctgatcggc
acaactgggcgcattatcgatttctacaaacagcgcgtctttaaccttaacaacattcaa
gccgtggtgctggatgaagccgaccgtatgttcgatcttggctttattaaagacatccgc
ttcttgttccgtcgtatgccggagccgaaagaccgtctcaacatgctgttctcagcaacg
ctgtcttaccgcgtgcaagagctggcgttcgaacacatgcacaatcctgagcacgtggtg
gtcgagccaacccaaaaaaccggtcaccgtattaaagaagagctgttctacccatcgaac
gaacacaagatggcattgctgcaaacgctacttgaagaagaatggccggatcgcgcgatc
gtctttgccaacaccaagcaccgttgtgagcaaatctggggccacttggctgccgatggt
caccgcgtgggtctgctgaacggtgacgtgccgcagaaaaaacgtgaacgcattcttgag
caatttaccaaaggtgagctagacgtattggttgccaccgacgtagccgcgcgcggcctg
cacattcctcaggtcacgcacgtgtttaactacgatttgccagacgattgtgaagactac
gttcaccgtatcggccgaaccggtcgtgctggtgccagcggtcattcgatcagctttgcg
tgtgaagagtacgcgatcaacctgccgggcatcgaagagtacatcgaacatgcgatcccg
acatctgaatatgacccatccgctctgctgacggatctgccaaaagcgctgaccatgcgt
tcatcgcaacaacgccgtaccaataccggcggccaacgcaacaacggcaaccgtaaatct
caacgccgcccgcgcgcacctcgtccgcgtcagaacaaggattcgtaa
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