Vibrio furnissii: vfu_A00963
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Entry
vfu_A00963 CDS
T01680
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K20919
sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
Organism
vfu
Vibrio furnissii
Pathway
vfu05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vfu00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
vfu_A00963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vfu03000
]
vfu_A00963
Transcription factors [BR:
vfu03000
]
Prokaryotic type
Helix-turn-helix
Other families
vfu_A00963
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VpsR
Sigma54_activat
Sigma54_activ_2
HTH_8
HTH_29
AAA_16
AAA_22
AAA
AAA_5
AAA_2
HTH_7
HTH_50
HTH_22
HTH_17
HTH_IclR
HTH_Tnp_1_2
DUF134
HTH_23
DUF815
HTH_30
RWP-RK
RRF
Motif
Other DBs
NCBI-ProteinID:
ADT86157
LinkDB
All DBs
Position
1:1002933..1004267
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AA seq
444 aa
AA seq
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MGTQFRMDSVPGSLIVVGGTYEPWLSVLEQVGWRCTQCADLRKADLLFSETGPCIGIVDL
SHDEFSLNGIANLVSSHKQVRWLAFIRESQLSSDTICQFIVNFCIDFFTAPIPDTQLLST
IGHQLGMLKLEKKVWPHYGSNSDLGLIGDSIPMKRLRDQIKRIGPTDVSILIYGESGSGK
ESVAKAIHKTSSRSQKPFVSVNCRAMSEKRIECELFGIGCDEESVSPLLLQADGGTLLLN
DILTLPKSQQLNLLRFLQEGTVDTPQGSKTVDVRVLAANSSDIEKALIDGDFNEELYHYI
NVLRINVPSLKERAADVAVLAKHFLREYSKEYNAQARSFTEDAMRALTRYHWPGNVRELM
NQIKRVVLMSDTIMLEESHLDLPKRGDGKRSLKSIRERSERDALLLVLESHSGQVSNAAK
ELGVSRATMYRLLNKHNLISDNSY
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgggcactcaattccgtatggactccgtgccgggctcgttaatcgtggtaggcggtacg
tacgagccgtggctgtcggtattagaacaagtggggtggcgctgtactcagtgcgcggat
ttgcgcaaagcggatctgttgtttagtgaaacagggccatgcattgggatcgtggattta
agtcacgatgaattcagcctcaatggcatcgccaatttggtgagtagtcacaaacaggtg
cgctggttagcgtttattcgcgagtctcagctgagctccgacaccatttgccagttcatt
gtgaacttctgtatcgatttctttaccgcacccattcccgatacacaactgctgagcacc
attggtcaccagctcggcatgctgaaacttgagaaaaaagtgtggccgcattatggctcc
aacagtgatttgggattgattggcgactccattcccatgaagcgtctgcgcgaccaaatt
aaacgcatcggcccaaccgatgtcagtatcctcatttacggtgagagcggctcaggcaaa
gagtcagtcgccaaagccattcacaaaacctcgtctcgttctcaaaaaccgtttgtttcc
gtcaactgccgtgcgatgtcagaaaaacgcatcgaatgcgagctgtttggcatcggctgt
gatgaagagtctgtgtcaccgttgctgctgcaagccgatggtggcaccttgctgctcaat
gatattctgaccttacccaaaagccagcagttgaacttgctgcgtttcttgcaagaaggc
accgtcgatacgccacaaggcagcaaaaccgttgatgtgcgcgttttggcggccaattcg
tccgacattgaaaaagcgctgattgacggcgatttcaatgaagagctctatcactacatc
aatgttctgcgcatcaacgtgccgagcctgaaagagcgcgcggcagacgtggccgtgttg
gcgaagcactttttgcgcgaatactccaaagagtacaacgcgcaggcgcgcagctttacc
gaagatgcgatgcgtgctttgactcgttatcactggcctggcaacgtgcgtgagttgatg
aaccagatcaagcgggtggtgttgatgtccgacaccatcatgttggaagagtcgcatctt
gatttaccgaaacggggcgatggtaaacgcagcctgaaaagcattcgagaacgctctgag
cgggatgcgttgttgctggtgctggagtcgcattctggtcaggtgtcgaatgctgccaaa
gagttgggtgtgtcgcgtgcgaccatgtaccggttgttgaacaagcacaacctcatttct
gacaactcgtactga
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