Vibrio furnissii: vfu_A01300
Help
Entry
vfu_A01300 CDS
T01680
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vfu
Vibrio furnissii
Pathway
vfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
vfu_A01300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vfu03019
]
vfu_A01300
03009 Ribosome biogenesis [BR:
vfu03009
]
vfu_A01300
Enzymes [BR:
vfu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
vfu_A01300
Messenger RNA biogenesis [BR:
vfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
vfu_A01300
Ribosome biogenesis [BR:
vfu03009
]
Prokaryotic type
rRNA processing factors
vfu_A01300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ADT86483
LinkDB
All DBs
Position
1:complement(1353680..1356814)
Genome browser
AA seq
1044 aa
AA seq
DB search
MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE
RHGFLPLKEIAREYFPEGYSYQGRPSIKEVLNEGQEVIVQVEKEERGSKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDERTELKSALSTLELPQGMGLIVRTAGVGKSGEELEWD
LNVLLNHWSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERALEH
IRLVRPDFVNRVKKYDGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDI
NSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLR
EAVRVDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVIRDNESLALSVL
RLIEEEALKDNTSQVLAVVPVSIASYLLNEKRRSVNHIERTQDVKITVVPNSDMETPHFE
VVRVRDGEEQNILSYLIPRKLEAMKEAEGKEPTETEVKPKRIEEPVLKGFAAPAQTAPAP
APTPKPQVEQPQEVKEEKPGLFGRFLKALSGLFAAPAEAPKKEEQDQPKAKGNDDRNKSS
QPRRERNDRRRNSRDKNKRKPNDDAKERTNENKAADKDAPNSRKQQERKPKQERTERNDR
NERNERGDRNERGDRNEPRRNNKRDDAKSAKLMEQGRQLAADAQQDPTDAPRAEAKEEKA
AVVKERRQRRKLTKQIRVKDQQAAELEAKSDTAPVADKAVESVKDINTDVAANEAQDTEK
DEQKQRRNRRSPRHLRASGQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMPRYDLAKPA
QKAAKVDEAPAAAVSVALGGFACPEMAMGKVIIRREMPQAVVEAEVVVEAPVEAVSTPVV
EAPVAVADVVTPSDVVESVDAEVVAAPKAAQEPNVQAPVLESVNVAESVDVAETVETAPA
VEAAIEPAPQPAPKAAPVAKPTVKAAVTSGHASAPMAKAPGSNELKEIAVVAAPFRTERY
QPIGAGSQAARNQAGAAMAKPQSF
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgttaattaacgcaactcaaaaagaagagttgcgtgtcgcgttggtagatggccagcga
cttttcgatttggatatcgaaagtccaggacatgaatccaaaaaagcgaatatctacaaa
ggacgcatcacccgcattgaaccaagtctggaagcagcattcgtcgattacggcgctgaa
cgacacggtttcctccccctcaaagaaattgcccgcgaatacttccctgaaggttatagc
taccaaggccgtccaagcattaaagaagtgctgaatgaaggccaagaagtgatcgtgcaa
gttgaaaaagaggaacgcggtagcaaaggtgcagccctcaccacttttatctctcttgct
ggcagctacctggtcctgatgccaaacaaccctcgcgccggtggtatttcacgccgtatc
gaaggggatgagcgtacagaacttaaatcggcgttaagcacgttggaactgcctcagggc
atgggccttatcgtgcgtaccgctggtgtaggtaaaagcggcgaagagctggagtgggac
ctgaatgttctgttgaaccactggagcgcgatcaagcaagcgtcggattcaaatcctgcg
ccattcctgatccaccaggaaagtaacgttatcgtacgtgcgattcgtgactacctgcgc
cgtgacatcggtgaaatcctgatcgacagcaacaccatctacgaacgtgcgcttgagcac
atccgtttggtgcgtcctgatttcgtcaatcgcgtgaagaagtatgacggtgaagttcca
ctgttcagccacttccagattgaaagccaaatcgaatctgcgttccaacgtgaagttcgt
ctgccatccggtggttcgattgtcatcgacccaaccgaagccctgacctctatcgatatc
aactctgcccgcgcaaccaaaggtggtgatatcgaagaaaccgcactgaacacaaactta
gaagctgcagacgaaattgctcgccaactacgcctgcgtgacctcggtggcctcgttgtt
atcgactttatcgatatgacgccagttcgccaccaacgtgaagtggaaaaccgtctacgt
gaagctgtacgtgtcgaccgcgctcgcgtgcaaatcggccgtatttcccgctttggtctg
ttggaaatgtcgcgtcagcgtctcagcccatcactggctgaagccagccatcacatctgt
cctcgttgtactggtacgggcgtgattcgtgataacgaatctctggctctatctgtgctg
cgtttgatcgaagaagaagctctgaaagacaacacctcgcaagttttggcggttgtgcct
gtctcgattgcatcttacctgttgaacgaaaaacgtcgctcggtgaaccacattgaacgc
actcaggatgtgaaaatcacggttgtgccaaactccgacatggaaacgcctcattttgaa
gtggtccgtgtacgtgatggcgaagagcagaacattctgtcttacctgatccctcgcaaa
ctggaagcaatgaaagaagccgaagggaaagagccaactgaaacggaagtcaaaccgaag
cgtattgaagaacctgtactgaaaggttttgctgcgccagctcaaacggctccagcgcct
gcgccaacaccaaaacctcaggttgaacaacctcaggaagtgaaggaagaaaaaccaggt
ctgtttggccgcttcttgaaagccctgtctggcctgttcgcagctcctgcagaagcaccg
aagaaagaagagcaagatcagccgaaagcgaaaggcaacgatgaccgtaataagtcgtct
cagcctcgtcgtgaacgcaatgatcgtcgtcgtaactctcgcgacaagaacaagcgtaag
ccaaacgacgacgcgaaagaaagaaccaacgagaacaaagccgcggataaagacgcgcca
aattctcgcaagcagcaagagcgtaagccgaagcaagagcgtacagaacgtaacgaccgc
aatgagcgtaatgagcgcggcgatcgtaacgaacgcggtgatcgcaacgaaccgcgtcgc
aataacaaacgtgacgatgcgaaatcagccaagctgatggaacaaggtcgtcagctcgcg
gcagatgcacaacaagacccaaccgatgcccctcgcgccgaagcgaaggaagaaaaagca
gcggtggtgaaagaacgtcgtcaacgtcgtaaactgaccaagcaaattcgcgtcaaagat
cagcaagccgctgagctggaagcgaagagtgacactgcgccagtggctgacaaagccgtt
gagtcggtgaaagacatcaacactgatgtggctgcaaacgaagcgcaagacactgaaaaa
gatgaacagaagcagcgtcgtaaccgtcgctcgcctcgccatctgcgtgcaagtggtcag
cgtcgtcgtcgtggtcgcgaccgtcgtccaaacccattccgtctgcgtaaaggtggcgtt
gcgtcaccagaaatggcaatgggtaaagtgatgccgcgttatgatctggcaaaaccagct
cagaaagccgcgaaagtcgacgaagcacctgcagcagcagtgagcgtcgcactcggtggc
tttgcttgtccagaaatggccatgggcaaagtgatcattcgtcgcgaaatgcctcaagcg
gtcgttgaagctgaagttgttgttgaagcgccggttgaagcagtcagcactcctgtcgtc
gaagcgccagtagcagtcgctgatgtggtcacgccatctgacgtggttgaaagcgttgat
gctgaagtcgtcgcagcacctaaagcggcacaggagccaaatgttcaagcgcctgttctt
gaatccgttaatgtggctgaatccgttgatgtggctgaaaccgttgaaacagcaccagct
gtagaagcggcaatcgagcccgcacctcaacctgcccctaaagcagcaccagtggcgaag
ccaacggtgaaagcggccgtgacatcaggccatgcttctgcaccaatggcaaaagcacct
ggctccaacgagctgaaagaaatcgcggtcgtggcagcgccattccgcactgagcgctac
caaccaatcggcgcaggcagccaagctgctcgcaatcaagccggtgcagcgatggctaaa
cctcagtctttctaa
DBGET
integrated database retrieval system
