Vibrio furnissii: vfu_A02999
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Entry
vfu_A02999 CDS
T01680
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
vfu
Vibrio furnissii
Pathway
vfu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vfu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
vfu_A02999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vfu03021
]
vfu_A02999
Transcription machinery [BR:
vfu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
vfu_A02999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Cwf_Cwc_15
Motif
Other DBs
NCBI-ProteinID:
ADT88109
LinkDB
All DBs
Position
1:3127558..3129444
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AA seq
628 aa
AA seq
DB search
MDQNPQSQLKLLVIKGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAP
DADDLALNDDNAITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQSAVAEYPGTIPYILEQFDKVQAEELRLTDLISGFVDPNEEETSAPTA
THIGSELSGADLEDEEEEKDVDSDDDEDEDEDGDDNSDDDSEEEVGIDPELALQKFTELR
NKFQNLQLAINEHGNESSKAQQATDLVLDVFREFRLTPKQFDHLVDTLRTSMDRVRTQER
LIMKSVVEVAKMPKKSFIAVFTGNESSEAWLDQVLASDKPYVDKIRQYEDDIRRSIQKLQ
IIEQETSLTVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLI
QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNR
ISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIED
TTLELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRE
RIRQIEAKALRKLRHPSRSETLRSFLDE
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaatccgcagtcacagcttaaactacttgtcattaaaggcaaggaacaaggc
tatctgacctacgccgaagtaaatgaccacctacctgctgagatcgtcgattctgaacag
gtagaagatattattcagatgatcaatgacatgggtatcaaagtagtcgaaactgctcct
gatgccgatgatctcgcgttaaacgacgacaacgcgatcactgatgaagatgcagcagaa
gccgctgccgctgcgctgtcaagcgtagaaagcgagattggtcgaacgaccgatccagtc
cgcatgtacatgcgtgaaatgggtacagttgaactactgactcgtgaaggtgaaatcgat
attgctaaacgcattgaagatgggattaaccaagttcaaagcgccgtagcagaatacccg
ggcaccatcccatacattcttgaacagtttgataaagttcaggcagaagaactacgcctg
accgatctgatctctggctttgttgatccaaacgaagaagaaacttctgcgccaacagca
acccacatcggttctgaactgagcggtgcggatctggaagacgaagaagaagagaaagac
gtcgacagcgatgacgacgaagatgaagacgaagatggtgatgacaacagcgatgacgat
agcgaagaagaagtcggtatcgaccctgagctagcgctgcaaaaattcactgaactacgt
aacaagttccagaacctgcaattggcgatcaacgagcacggcaacgaaagctcaaaagcg
caacaagcaaccgatcttgtactagacgtcttccgtgaattccgtctgacaccaaaacag
ttcgatcacctcgttgatacccttcgtacctcgatggatcgcgttcgcacccaagaacgt
ctgatcatgaagtctgtggttgaagtggcaaaaatgccgaagaaatcgttcatcgccgtc
tttacaggcaacgaatcgagcgaagcatggctggatcaagtgctggcatctgacaaaccg
tacgtcgacaaaattcgtcagtacgaagatgacattcgccgttctatccaaaaactgcag
atcatcgaacaagaaacctctttgaccgtcgaacgcatcaaagatatcagccgtcgcatg
tctatcggtgaagcgaaagcccgccgtgcgaagaaagagatggttgaggcgaacttacgt
ctggttatttctatcgcgaagaaatacaccaaccgtggcctacaattcttggatctgatt
caggaaggtaacatcggcctgatgaaagcggttgataagtttgaataccgtcgtggttac
aaattctcgacgtacgcaacatggtggatccgtcaggcgatcactcgctccatcgcagac
caagcgcgtacgatccgaattccggttcacatgatcgaaacgatcaacaaactgaaccgc
atctctcgtcagatgctacaggaaatgggtcgtgagccactgccggaagagctggctgaa
cgcatgcaaatgccggaagacaaaatccgcaaagtactgaaaattgccaaagagccaatc
tcaatggagacaccaatcggtgacgacgaagattcgcatctgggtgatttcatcgaggac
accacactggaactgccactggattctgcaacggcgacaagcctgaaggcagccactcgt
gacgttctggctggcctaacacctcgtgaagccaaagtactgcgtatgcgtttcggtatc
gacatgaacacggaccacacgctcgaagaagtgggcaaacagttcgacgtaactcgcgaa
cgtatccgtcagatcgaagcaaaagctttgcgtaaactgcgtcacccaagccgctcagaa
acactgcgcagcttcctcgacgagtaa
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