Vibrio furnissii: vfu_B00039
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Entry
vfu_B00039 CDS
T01680
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vfu
Vibrio furnissii
Brite
KEGG Orthology (KO) [BR:
vfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vfu03016
]
vfu_B00039
Enzymes [BR:
vfu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
vfu_B00039
Transfer RNA biogenesis [BR:
vfu03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
vfu_B00039
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
ADT88293
LinkDB
All DBs
Position
2:complement(39869..41875)
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AA seq
668 aa
AA seq
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MFQDNPLLAQLKQQIQENLPKKEGQIKATDKGFGFLEVDSKTSFFIPPPYMKKCMHGDKV
VAIIRTEKEREVAEPQELIEQSLTRFIGRVKLHKGKLNVAPDHPQLKKMPIKAKTKKGLN
PEHFQDGDWVVAHLTRHPLKDDNGFFAEISEKITDADDKIAPWWVTLAENDLPNCEPAGI
EHWELKDDADLTRVDLTDVPFVTIDGESTKDMDDALYAKKLDDGSFALTIAIADPTAYIT
PEDDMDKVARERGFTIYLPGRNIPMLPRDLADELCSLIENEVRPALCCTVTVDKDGVIGD
DIRFFAANIKSHARLVYDHVSDWLETGSSDAWQPTDEIAQVVRDLYEFSQARANWRETHA
VVFPDRPDYRFELSEDNDVVAIHADSRRTANRLVEESMITANICAGKTLQAAFGTGVFNT
HAGFKPEKVADIVALMNSHGAECSEESVNTVEGFAALRRWLSTQETSYLDNRIRKSQSYS
EIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRMLKAHILGKESVQKPDETVGEELALH
RKHHKIAERNVADWLYARTLAEEPAKETRFTAEIFDINRAGMRVRLLENGAMAFIPGALI
VNNKERIECNGEDGTVSIDKNVVYKLGDTLEVVLTEVNQENRSVVAKPTQVFADAPKAPE
ASQEPSQA
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccactacttgcccaattaaagcaacagattcaagaaaacctgccg
aaaaaagaaggtcaaattaaagcgaccgataaaggatttggtttcctcgaagttgacagc
aaaaccagcttctttattccaccaccgtacatgaaaaaatgcatgcatggtgacaaagtg
gttgccatcatccgcacagagaaagagcgtgaagtagcggaacctcaagaactaatcgaa
caatctctgacacgttttattggccgcgtaaaacttcacaaaggcaaactgaacgttgca
ccggatcacccacaattgaaaaagatgccaatcaaggcaaaaacgaaaaagggtttgaat
ccagaacactttcaagacggcgactgggtcgttgctcacctgactcgtcacccgctgaaa
gacgacaatggtttctttgctgaaatttcagagaaaatcactgacgccgatgacaagatt
gcaccttggtgggtcacgctggcagaaaacgatttgccaaactgcgaaccggccggtatc
gaacactgggaattaaaagacgacgctgatctcacgcgtgtcgatttgacagatgtccca
tttgtcaccatcgatggtgaatcgactaaagatatggacgatgcgctgtacgcgaaaaaa
ctggacgatggcagcttcgccctgaccattgctatcgccgatccgaccgcctacatcacc
ccagaagatgatatggacaaagtagcgcgcgagcgcggcttcactatctatttaccgggt
cgcaatattccaatgctgccacgcgatctggctgacgaactctgttcgctgatcgaaaac
gaagttcgccctgccctgtgctgcaccgtcaccgttgataaagatggcgtgattggcgac
gacattcgtttctttgctgccaacattaaatcgcacgcgcgtctggtttacgaccacgta
tctgattggttagaaaccggttcaagcgacgcttggcaaccgactgatgagatcgcgcaa
gtggtacgcgacctatacgagttttctcaagcgcgtgccaactggcgtgaaacacacgcg
gtcgtcttccccgatcgtcccgactaccgtttcgaactgagcgaagacaacgacgtggtg
gcaattcatgccgactcgcgtcgcaccgcaaatcgcttggttgaagaatcgatgatcacc
gcgaatatctgcgccggtaaaacactgcaagcggcctttggcacgggtgtattcaacaca
cacgcaggctttaagccagaaaaagttgccgatatcgttgcgctgatgaattcgcatggc
gcggaatgcagcgaagagagcgtgaataccgtagaaggtttcgccgcgctgcgtcgttgg
ttgtcgactcaagaaacatcttacttggacaaccgcattcgtaagagccaaagctacagc
gaaatcggcaatcaaccattgccacacttcgctatgggccttgatgtttacgccacgtgg
acgtcgccgattcgtaaatacggcgacatgatcaaccaccgaatgctgaaagcacacatt
ctgggtaaagaatcggtccaaaagccagacgaaactgtgggcgaagagttggctctgcat
cgtaaacaccacaagattgctgaacgcaacgttgcagactggttgtatgcacgcacgctg
gctgaagagccagcaaaagagacacgctttactgcggaaatcttcgacatcaaccgcgcc
ggcatgcgtgtacgtttgcttgagaacggcgcaatggccttcattcctggcgcattgatt
gtcaacaacaaagaacgtatcgagtgcaacggcgaagatggcacggtgtctatcgataaa
aatgtggtttacaaactgggcgacacactggaagtcgtgttgaccgaagtgaaccaagaa
aaccgcagtgttgtggccaaaccaacgcaagtgtttgccgatgcgccgaaagcgccagaa
gcttcacaagagccaagccaagcgtaa
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