Vibrio furnissii: vfu_B00040
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Entry
vfu_B00040 CDS
T01680
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vfu
Vibrio furnissii
Pathway
vfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
vfu_B00040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vfu03019
]
vfu_B00040
03009 Ribosome biogenesis [BR:
vfu03009
]
vfu_B00040
Enzymes [BR:
vfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
vfu_B00040
Messenger RNA biogenesis [BR:
vfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
vfu_B00040
Ribosome biogenesis [BR:
vfu03009
]
Prokaryotic type
rRNA helicases
vfu_B00040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ADT88294
LinkDB
All DBs
Position
2:42251..44149
Genome browser
AA seq
632 aa
AA seq
DB search
MQESVIQFSDLALNSAILSALTDMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAF
SLPLLNKLDLNQYKPQAIVMAPTRELAIQVAAEVKNLGQNIKGLKVLEIYGGASIVDQMR
ALKSGAHIVVGTPGRVKDLISRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQAPET
AQRVLFSATMPPMVKDIVDRFLRDPARVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLL
ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTRSSMEEIQLPHRDKVAEARLSQLAIELEAEKEHASLEKFAELVEKLQASLEIDANT
LAAILLKRQQGKRPLFYVGEDPMIEAVERDKQRRRERRENGGDRRDGRREYTANTDWETY
QLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKTMSADVTGKLRKLR
IRQKEVGAVVCDFDDFRESRGRRDGGNRRDGGFRGNREGGNREGGRREGGFRGNREGGSR
EGGERRFDRNRGGDNRGNHRGERGHSRRRTEA
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaatctgtcattcaattcagtgacttagcacttaacagtgccatcctttctgcc
ctaaccgatatgggcttcgtttctccaactccaattcaggctgctgcaattcctcttctt
ctggaaggccgcgacgcactaggtaaagcacaaacaggtacgggtaaaactgcagcgttc
tcgctgccactactgaacaaattggatttgaatcagtacaaaccgcaagcaatcgtaatg
gctccaactcgcgaactggctatccaggttgcggcagaagttaaaaatctgggccaaaac
attaagggcttgaaagttctagagatctacggtggtgcatctatcgttgatcaaatgcgc
gctctgaaatctggcgcacacatcgttgtgggtacaccaggccgcgtcaaagacctgatc
agccgtgaacgtctgcacctagacgaatgtcatacattcgtactggatgaagcagatgaa
atgctgaaaatgggcttcgttgacgacgtgacttggatcatggaacaagcaccagaaaca
gcacaacgcgttctgttctctgcaaccatgccaccgatggtaaaagacatcgttgatcgt
ttcctacgtgatccagcacgcgttgacgttgccggttcaaaccaaactgttgcaaaagta
gagcagcagtactgggttgtaaaaggcgtagagaaagatgaagcaatggctcgtcttctt
gaaactgaagaaacggatgcatcaatcgtattcgtacgtactcgtcaagacaccgagcgc
ctagcggattggttgtgtgcacgtggctttaaagcagcggcactgcacggtgatattcct
cagtctctgcgtgagcgcactgttgatcacatcaaacaaggtgtgattgatattctggtt
gcgactgacgttgtggcgcgtggtcttgatgtgccacgtatcacgcacgtattcaactac
gacattccgttcgatgtagaatcatacattcaccgtatcggtcgtactggccgtgctggt
cgtaaaggtaaagcgatcctgttggttcgtactaaccagatccgcatgttgcgtaccatc
gagcgtgtgacacgttcttcaatggaagaaatccaacttccacaccgcgataaagtggct
gaagcacgtctaagccaactggcgattgagctggaagctgagaaagagcacgcttctcta
gagaaatttgctgagttggttgagaaactgcaagcgtctctggaaattgatgcaaacacg
ctggctgcgattctgctgaaacgtcaacaaggcaaacgtcctctgttctacgtaggtgaa
gatccaatgatcgaagctgtagagcgtgacaaacagcgtcgtcgtgaacgtcgtgaaaac
ggtggtgatcgtcgtgatggtcgtcgtgaatatactgcaaacacagactgggaaacttac
cagctgcaagtaggccgtgatcaaggcgtacaagtgaaagacatcgttggcgcactcgcg
aacgaactgggcctgacaaaaggttctatcggcgcgatcaaactggcgcaaggccacacg
tttgttcagctgcctaaaacaatgtctgcagacgtgactggcaaactacgcaaactgcgt
attcgtcagaaagaagttggcgcagttgtgtgtgacttcgatgacttccgcgaatcacgt
ggtcgtcgtgatggcggtaaccgtcgtgacggtggtttccgtggcaaccgtgaaggcgga
aaccgcgaaggcggccgtcgtgaaggtggcttccgtggtaaccgtgaaggcggtagccgc
gaaggtggtgaacgtcgtttcgaccgtaatcgtggtggcgataaccgtggtaaccaccgt
ggtgaacgtggtcacagccgtcgtcgcactgaagcataa
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