Vibrio furnissii: vfu_B01349
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Entry
vfu_B01349 CDS
T01680
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
vfu
Vibrio furnissii
Brite
KEGG Orthology (KO) [BR:
vfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vfu03016
]
vfu_B01349
Enzymes [BR:
vfu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
vfu_B01349
Transfer RNA biogenesis [BR:
vfu03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
vfu_B01349
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
RtcR
Motif
Other DBs
NCBI-ProteinID:
ADT89530
LinkDB
All DBs
Position
2:1427125..1427664
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AA seq
179 aa
AA seq
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MNSDLRCFFALTFAAEEKAQLRRERERLKTHATKGTFTHSDNFHLTLEFIGEVASEHLPT
LKGLLHELECAPMTLHVDHLGHFHIKGRQLVWLGVTQQHDLMALQAALRMKLADTPFPPE
NRPYVPHITLGRHVMLDTRLSDIPMAPLTLVVHSVALMESKHVDNKLIYDVLEEIRLVD
NT seq
540 nt
NT seq
+upstream
nt +downstream
nt
atgaattcggacttgcgttgtttctttgcactgacctttgctgccgaggaaaaagctcag
cttcgccgcgagcgcgagcggctcaaaactcatgccacaaaggggacgtttacgcacagc
gataactttcatctcacgttggaattcattggtgaggtcgcaagtgagcatttacccacg
ctgaaaggcttattgcatgagcttgaatgcgcgccgatgacacttcatgtcgaccatctc
ggtcatttccatatcaaaggtcgccaactggtttggctgggtgtgacccaacaacatgac
ttgatggccctgcaagcagcgctacgcatgaagctcgctgacaccccctttcccccagaa
aatcgaccttatgtgccgcacattacgttgggacggcacgtgatgctcgatacccgtttg
agcgacataccgatggcgccgttgacgctggtggtgcattccgtcgcgttgatggaaagc
aagcacgtcgacaacaagctgatctatgacgtgctagaggaaattcgtttggtcgactga
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