Vagococcus fluvialis: K5K99_01250
Help
Entry
K5K99_01250 CDS
T07851
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vfv
Vagococcus fluvialis
Pathway
vfv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vfv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K5K99_01250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vfv03019
]
K5K99_01250
03009 Ribosome biogenesis [BR:
vfv03009
]
K5K99_01250
Enzymes [BR:
vfv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K5K99_01250
Messenger RNA biogenesis [BR:
vfv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K5K99_01250
Ribosome biogenesis [BR:
vfv03009
]
Prokaryotic type
rRNA helicases
K5K99_01250
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
NAT10_TcmA_helicase
AAA_22
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UDM75384
LinkDB
All DBs
Position
complement(240448..242064)
Genome browser
AA seq
538 aa
AA seq
DB search
MTEAELLGGYHLKFSELNLDKRLLQAVEKIGFEEATPIQSATIPLALEGKDVIGQAQTGT
GKTAAFGLPMLDKIDTEKSTIQGLVIAPTRELAIQTQEEIYRLGKDKRIKVQAVYGGADI
GRQIKSLKNNPHIVVGTPGRMLDHINRRTLKLDKVETLVLDEADEMLNMGFLEDIEAIIS
KVPETRQTLLFSATMPDSIKRIGVKFMKEPEHVKIKAKEMTANLIDQYFVRCKEFEKFDV
MTRLFDVQNPDLTIVFGRTKRRVDELARGLEMRGYKAEGIHGDLPQHKRMSILKAFKNDE
IDILVATDVAARGLDISGVSHVYNYDIPQDPESYVHRIGRTGRAGKEGMSVTFVTPNEMS
YLHVIEDLTKKKMTPLRPPSKKEAIEGQIGSAVATIKEAMAENGLESYQEAASDLLENYS
AEDLAALLIKQIAKDDASEVPVNITPERPLPSRGGKRGGGNRGGNRGGGNRGGNRGGGRG
GNRDNRGGNREDNRKRDNYKKNNRNDNNKPGENRKRNNNNANSNKDKSRGFTIRNNAK
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgactgaggcagagttattaggaggatatcatttgaaatttagtgaattaaatttagac
aagagattgttacaagcagtagagaaaatcggttttgaggaagctaccccaattcaaagt
gcaacgattccattggcattagaaggaaaagacgttattggacaagcccaaacaggtact
ggtaaaacagcagcttttggtttaccaatgttagataaaattgatacagaaaaatcaact
atccaaggtttagttattgctccaacaagagagttagctatccaaacacaagaagaaatt
taccgtctaggtaaagataaaagaattaaagttcaagcagtttatggtggagctgatatt
ggtcgtcagatcaaatcattaaaaaataatccacacattgttgtaggtactccaggtaga
atgttagatcatatcaaccgtcgtacgttaaaattagataaagtagaaactttagtttta
gatgaagcagatgaaatgctaaacatgggattcttagaagatattgaagcaattatctct
aaagttcctgaaacaagacaaacattactattctcagcaactatgccagatagtattaaa
cgcattggtgttaagttcatgaaagagcctgaacacgttaagattaaagctaaagaaatg
acagctaacttaattgatcaatactttgtgcgttgtaaagaatttgaaaaatttgatgtt
atgactcgtttattcgacgttcagaatccagatttaacaattgtctttggtcgtacaaaa
cgtcgtgttgatgaattagcacgtggattagaaatgcgtggatacaaagctgaaggaatt
catggtgatttacctcaacataaacgtatgagtatcttaaaagctttcaaaaatgatgaa
attgatattttagtagcaacagacgtagctgcacgtggattagatatttcaggtgtatct
catgtttataactacgatattcctcaagatccagaaagttatgttcaccgtattggacgt
actggccgtgctggtaaagaaggtatgtcagttacttttgttacaccaaacgaaatgagc
tacttacatgttattgaagatttaactaagaaaaaaatgacaccacttcgtccaccttct
aaaaaagaagcaatcgaaggacaaattggttcagcagttgcaactatcaaagaagcaatg
gctgaaaatggtttagagtcttaccaagaggcagcaagtgatttattagaaaactactca
gcagaagatttagcagcattgttaattaaacaaattgctaaagatgatgcttcagaagtt
cctgtaaatattacacctgagagaccattaccaagtcgtggtggaaaacgtggcggaggt
aaccgtggcggaaatcgtggtggtggtaaccgcggtggcaatcgtggtggaggtcgcgga
ggcaacagagataaccgtggcggaaatcgtgaagataaccgtaaacgcgataactacaaa
aaaaataaccgtaacgataacaacaaaccaggtgaaaatcgtaagcgtaacaacaataac
gctaacagcaacaaagataaatcacgtggctttacaattcgtaataacgcaaaataa
DBGET
integrated database retrieval system
