Vagococcus fluvialis: K5K99_03140
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Entry
K5K99_03140 CDS
T07851
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vfv
Vagococcus fluvialis
Pathway
vfv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vfv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K5K99_03140 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vfv03400
]
K5K99_03140 (mfd)
Enzymes [BR:
vfv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K5K99_03140 (mfd)
DNA repair and recombination proteins [BR:
vfv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K5K99_03140 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_16
IstB_IS21
MFD_D3
AAA_22
RecG_dom3_C
UB2H
TniB
RuvC
Motif
Other DBs
NCBI-ProteinID:
UDM74616
LinkDB
All DBs
Position
586715..590254
Genome browser
AA seq
1179 aa
AA seq
DB search
MYLNQALVGRISQSAKVKEWQEQLTKESSHLITGLAGSAKTLAMGTLLAKENKILVVTPN
LYYGSKLIDDLQHIIEEKYLHYFPVDEVAAVEMSFSSPEALSDRINALNFLVNDEPGILV
TSLAGLRRYLPNPENWQKQTLVFEKDGILDLSTLAETLVLIGYQKEQMIGKPGEFSIRGS
IVDIYPLTSEYPVRIDLFDDEIESLRLFDVETQRSIGEIDKILVTPAMDTPLTKEELTSG
SERLEKLAAEKLEKMAPGEDKERISAHFSYLVEEWAQGHPTEEVKMYTDLLYEDKFFLTD
YLGADDFILVDDYSRQVESERELLREEAEWVTLKLEEGIYFENHELGGDFRSILKGAKQS
KTYFSLFQKGMGNLRFSSIHPFEYRTMQQFFGQMPLLKTEIERWRKQKHTVVVLADNEER
TEKIENLFLDFEIPTVINNSNKLLTGEVQIQTGNLAAGFELPDEKLVILVEKEILHTQGK
KRARKQTISNAERLKSYNELKPGDYVVHANHGIGKYIGMETLLSAGVHQDYMTILYKNND
KLFIPVTQLDLIQKYVASESKTPRVNKLGGSEWVKTKNKVSARVEDIADDLIKLYAAREA
EKGYAFGPDDEYQMEFEGNFPYSETEDQLRSIQEIKQDMEKERPMDRLLVGDVGYGKTEV
AIRAAFKAVRDGKQVAFLVPTTILAQQHYETMRDRFANFPVNVDLLSRFRTKKQQNETAE
KLKKGQVDIVVGTHRVLSKDIEFMDLGLLIVDEEQRFGVKHKERLKQIKSQVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPANRYPVQTYVMEKNPGAIREACEREIARGGQIFYLYN
RVDTIEQKVDELQALVPDARISYAHGQMTEVQLENRLLEFINGDYDILVTTTIIETGVDI
PNVNTLFVENADYMGLSQLYQLRGRVGRSNRVAYAYFMYEPQKVLTEVSEKRLQVIKDFT
ELGSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYTQMLTEAVNRKRGTESKDTKTI
TEIDLGIDAYIPTEYIEDERQKIEIYKRIRQLESQEMFEELEGDLLDRFGEYPDEVANLL
TVGLIKMNSDFALVEKIQKRGMVIEVLLSKAGTNAYTIEQIFKALSATTLKAELSSDDAL
AINLKLTKQITEAAWLQEVAQFIEALREQKYAKQAKKQG
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgtatttgaatcaagcactagttggtcgaattagccaaagtgccaaagtaaaagaatgg
caagagcaattaaccaaagagtcttcacatttaatcactggactagcaggttctgctaaa
acattagctatgggaactttgctggctaaagaaaataaaatactagttgtgactcccaat
ttatactatggcagtaaattaatagatgatctgcaacacataatagaagaaaagtactta
cattattttccagttgatgaagtagcagctgttgagatgtctttttcttcacctgaagct
ttatcagatagaatcaatgccttaaactttttagtcaatgatgaaccaggaattttagtg
acatcattagctggtttgcgtcgttatttaccaaatcctgagaattggcaaaaacaaact
ttagtttttgaaaaagacgggattctagatttaagtactttggcagaaactttagttcta
attgggtatcaaaaagagcaaatgataggaaaaccgggagagtttagtattcggggaagc
attgttgatatttacccgttaacaagcgaatatcctgtacgtattgatttatttgatgat
gaaattgaatcactacgtttatttgatgtggaaacccagcgctcgattggtgagattgat
aagattttagtgacacctgctatggacacaccactaacaaaggaagagctaactagtggt
agtgagcgtttagaaaaattagcagctgaaaaattagaaaagatggcaccaggtgaggat
aaggaacgtatttcggctcactttagttacttagtggaagaatgggcccaaggtcatcca
acagaagaagtcaaaatgtatacagatttactgtatgaagataagtttttcttaacggat
tatttaggtgcagatgattttattttagtagatgattacagtcgtcaagttgaaagtgaa
cgtgagttattacgagaagaagccgagtgggtaacgctaaaacttgaagagggtatctat
tttgaaaatcatgaattaggtggcgactttagaagtattttaaaaggcgctaagcaaagt
aaaacgtatttttctttattccaaaagggaatgggaaatttaagattttctagtattcat
ccctttgagtaccgtacaatgcaacaatttttcggtcaaatgccacttcttaaaactgag
attgaaagatggcgtaagcaaaaacatactgtggttgttttagcagacaatgaagagcga
acagaaaaaatcgaaaatctctttttagattttgaaattccaacagtgattaataatagt
aataaattgttaacaggtgaagttcaaattcaaactggaaacttagcagctggttttgaa
ttacctgatgaaaaattagttattttagtagaaaaagaaatcttacacactcaaggtaaa
aagagagcacgtaagcaaactatttctaatgcagaaagattaaaaagttataacgagcta
aaaccaggagattatgtagttcacgcaaatcacgggattggtaaatatattggaatggaa
accttacttagtgccggcgtccatcaagattacatgactattctttataaaaataatgac
aaattatttattcctgttactcagcttgatttaattcaaaaatatgttgcttctgaatct
aaaacaccgcgagttaataaattgggtggttctgaatgggttaaaacaaaaaataaagtc
tcagctcgtgttgaagacattgctgatgatttaattaaactttatgcggctcgtgaagct
gaaaaaggttatgcttttggaccagatgatgagtatcaaatggaatttgaaggtaacttc
ccttattcagagacagaggatcagttacgtagtattcaagaaatcaagcaagatatggaa
aaagaaagaccgatggaccgcctgcttgtaggagatgttggttacgggaaaacagaagtc
gctatcagagcagcctttaaagctgttagagatggcaaacaagtagcctttttagttcca
acaactattttagctcagcaacattacgaaacaatgcgtgacaggtttgctaatttccca
gtaaatgttgatttacttagtcgttttagaacgaaaaaacagcaaaatgaaacagctgag
aaattaaaaaaaggccaagtagatattgtcgttggaacgcaccgtgttttatctaaagat
attgagtttatggatttaggtttgttgattgtagatgaggagcaacgttttggcgtaaaa
cataaagaacgtctaaagcaaattaagtctcaagtggatgtcttaactttaacggccaca
ccgattccgagaacacttcacatgtccatgttaggtgtacgtgatttatcagttattgaa
accccacctgcaaatcgttacccagttcaaacttatgtgatggagaaaaatccaggggcg
attcgtgaggcttgtgagagagaaattgctcgtggtggtcagattttctatctctataat
agagtggataccattgagcaaaaagtcgatgaactgcaagctttagtaccagatgctaga
atcagttatgctcatggtcaaatgacagaagtgcaactagaaaatcgcttgttagaattt
attaatggagattacgatattttagtcacaacgacaattattgaaacaggtgtagatatt
cctaatgtgaatactttgtttgtagaaaatgcggattacatgggactatctcagttgtat
caattaagaggacgtgttggtcgtagtaaccgtgtggcttatgcatatttcatgtatgaa
ccgcaaaaagtcttaactgaagtcagtgaaaaacgtctgcaagttattaaagattttacc
gaacttggttcaggatttaagattgccatgcgagatttatctattcgtggagcaggtaat
ttattaggagcacaacagcacggctttattgattctgttggttttgatatgtatacacaa
atgttaacagaagcagttaatcgaaaacgtggtactgaaagtaaggacactaaaacaatt
actgaaattgatttaggaattgatgcttatattccaactgaatatatagaagacgaaaga
caaaaaattgaaatctataaacgaattcgccaattagaaagtcaagagatgtttgaggag
ctagagggagatttactagaccgttttggtgaatatcctgatgaagtagctaatcttcta
acagttggtttgattaagatgaatagtgattttgctttagttgaaaaaattcaaaaacgt
ggcatggtgattgaagttttattatcaaaagctgggactaatgcctacacaattgagcaa
atctttaaagctttatcagcaacgactttaaaagcagagttaagttctgatgatgcgcta
gcaattaatttaaaattaacaaaacaaataacagaggcagcttggctacaagaagtggct
caatttattgaagctttacgtgagcaaaaatacgctaaacaagctaaaaagcaagggtaa
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integrated database retrieval system
