Vagococcus fluvialis: K5K99_04440
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Entry
K5K99_04440 CDS
T07851
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vfv
Vagococcus fluvialis
Pathway
vfv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vfv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K5K99_04440 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vfv03021
]
K5K99_04440 (rpoC)
03400 DNA repair and recombination proteins [BR:
vfv03400
]
K5K99_04440 (rpoC)
Enzymes [BR:
vfv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K5K99_04440 (rpoC)
Transcription machinery [BR:
vfv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K5K99_04440 (rpoC)
DNA repair and recombination proteins [BR:
vfv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K5K99_04440 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
UDM75413
LinkDB
All DBs
Position
846205..849828
Genome browser
AA seq
1207 aa
AA seq
DB search
MQIGLASSEKIRSWSYGEVKKPETINYRTLKPERDGLFCERIFGPTKDWECACGKYKRIR
YKGIVCDRCGVEVTRSKVRRERMAHIELAAPVTHIWYFKGIPSRMGLVLDMSPRALEEII
YFASYVVTDAGDTSLEVKQLLTEREYREKRQQYGQGFQAGMGAEAIKRLLENVDAEKEVV
ELKEELKTAQGQKRTRAIRRLDILEAFRTSGNEPNWMVMDVVPIIPPDLRPMVQLEGGRF
ATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNGRRGRPVTGPG
NRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPFLKMYQCGLPKEMAIELFKPF
VMHELVKREIASNIKNAKRQIERQEDAVWDVLEDVIKEHPVLLNRAPTLHRLGIQAFEPV
LVEGRAIRLHPLVCEAYNADFDGDQMAVHVPLSEEAQAEARLLMLAAQNILNPKDGKPVV
TPSQDMVLGNYYLTMEEPGQIGEGMVFRNLDEVVLAWRNGYVHLHSRIGLQTSSMPEKPF
TEWQRDRILITTAGKVIFNEIMPPEFPYLNEPTDYNLTVQTPDKYFVEAGTDIPAHIAEQ
EKIGPFKKKNLGNIIAEVFKRFKITETSKMLDRMKDLGYKHSTYAGMTVGIADIVVLHEK
QGMIEEAHKQVDAVTKQFRRGLITDDERYERVIGIWNATKDAIQIKLMESLDDRNPIFMM
SDSGARGNISNFTQLAGMRGLMAAPNGRIMELPIVSNFREGLTVLEMFISTHGARKGMTD
TALKTADSGYLTRRLVDVAQDVIIRETDCGTDRGLDIKAIREGNEIIETLEERMLGRYTR
KSVINPETGAKIIGANEIITEDIVKEITDAGIEEISIRSVYTCNTKHGVCKHCYGRNLAT
GSEVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIFEARNPKGVA
VVSEVAGEVIEISEDAADRTKEVIVKGTTDTRTYSVPYTSRMKVAEGDIIERGTPLTEGS
IEPKQLLTITDVLTVENYLLKEVQKVYRMQGVEIGDKHIEVMVRQMLRKVRVMDPGDSDI
LPGTLLDISEFKERNYNTLVAGGTPATGRPVLLGITKASLETNSFLSAASFQETTRVLTD
AAIRGKKDHLLGLKENVIIGKIIPAGTGMPKYRNMEPKEVGVASENVYSISDIEAQMAAA
DALKTKD
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatcggcttagcttcttctgaaaaaataagaagctggtcatacggtgaagtaaaa
aaacctgaaacaattaattaccgtactttaaaaccagaacgtgatggtcttttctgtgaa
cgcattttcggtcctactaaggactgggaatgtgcttgtggaaaatataaacgtattcgt
tataagggaatcgtttgtgaccgttgtggagttgaggtgacacgttctaaagttcgtcgt
gaacgtatggctcatattgagttagcagcaccagtaacacacatttggtacttcaaagga
attccaagtcgtatgggtcttgtacttgatatgagtcctcgtgccttggaagaaatcatc
tactttgcatcatatgtagtaacagatgcaggagatacttctttagaagtgaaacaatta
ttaacagagcgcgaataccgcgaaaaacgtcaacaatatggacaaggtttccaagctgga
atgggtgctgaagcaatcaaacgcctacttgaaaatgttgatgctgaaaaagaagttgtt
gaattaaaagaagaattaaaaacagcacaaggtcaaaaaagaactcgtgcaatccgtcgt
ctagatattttagaagcatttagaacttctggaaatgaacctaactggatggtaatggac
gttgtgccaattattcctccagatttacgtccaatggttcaattagagggtggacgtttt
gcaacaagtgatttaaatgacttataccgtcgtgtgattaaccgtaataaccgtctaaaa
cgtttattagaccttaatgcacctggtatcatcgttcaaaatgagaaacgtatgttacaa
gaagctgtagatgctttgattgataatggtcgtcgtggccgtccagttactggaccaggt
aaccgtccacttaaatctctatctcatatgcttaaaggtaaacaaggacgtttccgtcaa
aacttacttggaaaacgtgttgactattcaggtcgttcggtaatcgttgttgggccattc
ctaaaaatgtaccaatgtggtttaccaaaagaaatggccattgagttattcaaaccattt
gtgatgcatgaattagttaaacgtgaaattgcaagtaacattaaaaatgctaaacgccaa
attgagcgtcaagaagatgctgtttgggatgtattagaagatgttattaaagaacatcca
gtattacttaaccgagcacctacattacatagacttggtatccaagctttcgagcctgtt
ttagttgaaggtcgcgcaattcgtcttcacccattagtatgtgaggcttataatgccgac
tttgatggggaccaaatggcggttcacgttcctttaagtgaagaagcacaagcagaagca
cgtcttttaatgttagctgcacaaaatatccttaaccctaaagatggtaaacctgttgtt
acaccatctcaagatatggttcttggtaactactatttaacaatggaagagccaggacaa
atcggtgaaggtatggtatttagaaacttagacgaagttgtcttagcatggagaaatggt
tacgtacatttacattctcgtattggtttacaaacaagctcaatgcctgaaaaaccattt
actgaatggcaacgtgatcgtatcttaattacaactgctggtaaagttatctttaatgaa
attatgccaccagaattcccttacttaaatgagccaaccgactacaacttaacagttcaa
actcctgataagtattttgtagaagctggaactgatattcctgcccacatcgctgagcaa
gaaaaaatcggaccattcaagaagaaaaacttaggtaacatcattgctgaggtgttcaaa
cgcttcaagattactgaaacatcaaaaatgttagatagaatgaaagacttaggttacaaa
cattctacttacgctggtatgacagtagggattgcggatatcgttgtcttacatgaaaaa
caaggcatgattgaagaagctcataaacaagtagatgctgttactaaacaattccgtcgt
ggtttaatcactgatgacgagcgttatgagcgtgttattggtatttggaatgcaacaaaa
gatgctatccaaattaaactgatggaaagtttagatgaccgtaacccaatctttatgatg
tctgactctggtgcccgtggtaacatttccaactttactcagcttgctggtatgcgtgga
cttatggccgcacctaatggacgtatcatggagttaccgattgtatctaacttccgtgaa
ggattaacagtcttagaaatgtttatctcaactcacggtgctcgtaaaggtatgacggat
acggcccttaagactgccgattcaggttacttaactcgtcgtttagtagacgttgcccaa
gacgttatcattcgtgaaacagattgtggaaccgatcgtggtttagatattaaagcaatt
agagaaggtaatgaaatcattgaaactcttgaagagcgtatgttaggtcgttacacacgt
aagtctgtaattaaccctgaaacaggtgctaaaatcattggtgctaatgaaattattact
gaagatattgttaaagaaattactgacgctggaatcgaagaaatttcaatccgctcagta
tacacatgtaatacaaaacacggtgtatgtaaacactgttacggacgtaacttagctaca
ggttctgaagtagaagttggggaagcagttggtacaattgccgctcaatctatcggtgag
cctggtactcagttaacaatgcgtaccttccatacgggtggggttgccggtgatgatatc
actcaaggtttacctcgtatccaagagatttttgaagcacgtaatcctaaaggggttgct
gttgtttctgaagttgcaggagaagttattgaaatttctgaagatgcagctgatcgtacg
aaagaagttatcgttaaaggaactacagatacaagaacttacagcgtaccttatacatca
cgtatgaaagttgctgaaggtgacattatcgaacgtggtactccgttaacagaaggttct
attgagccaaaacaattattaacaattacagatgtgttaactgttgaaaactacttactt
aaagaggtacaaaaagtttaccgtatgcaaggggtagaaatcggagataaacatatcgaa
gttatggttcgtcaaatgttacgtaaagtccgtgtcatggatccaggtgattcagatatc
ttaccaggtactttacttgatattagtgaattcaaagagcgtaactacaatacattagta
gccggtggaacacctgcgacaggtcgcccagtgttactaggtattacgaaagcttctctt
gaaacaaacagtttcttatctgcagcttcattccaggaaacaactcgtgtgttaactgat
gcagcgattcgcggtaagaaagaccacttacttggacttaaagaaaatgttattatcggt
aagattattcctgccggtactggtatgccaaaataccgtaatatggaaccaaaagaagtg
ggcgttgctagtgaaaatgtttatagtattagtgacattgaagcgcaaatggcagcagct
gacgcattaaaaacaaaagactaa
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