Vagococcus fluvialis: K5K99_07545
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Entry
K5K99_07545 CDS
T07851
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
vfv
Vagococcus fluvialis
Brite
KEGG Orthology (KO) [BR:
vfv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vfv03400
]
K5K99_07545
Enzymes [BR:
vfv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K5K99_07545
DNA repair and recombination proteins [BR:
vfv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
K5K99_07545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
UDM72827
LinkDB
All DBs
Position
1449200..1452763
Genome browser
AA seq
1187 aa
AA seq
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MSVQFVIGSASQDHSKELVKMADEWLQQSSDHEVFYLVPNHVKFETEIHVLKELAELPRY
SKWENMVSMRLQVFSFSRLAWYYLQNTAEYQEQQLSTVSKFMILKQVLLENATNLELFQY
EINKPGFVEQLIDLFDELQEGVITPEDLEETLNELKIQGKVTENFIKLNDIKAIYTYYSE
RISELDASGHDLLLSLGDYLQNKNLKNVMFIVSGFSNFTAIEKQLIESLMKASGEFKISL
VVDKAYTNQVPEARDLFFNTGHLYYELYQIAKENKLPILFDKKLTDETTSMTDLDMVWQQ
SQKLMKTSDKVLMDKSNVPLEVWNAVDPYNEMLSVAKEIRRLVSIEGYRYQDITVLTRDL
ASYQQIISPILVENDIPFYFNQEEEMKHHPLIEFINALFQMKQHFYQYKDVLRFLRSEIF
SPNSLEIDSLPEWENHRKELREAIDYTENVVLAYGYSGSDWVKKRDWRYVYYQYEDEVEG
EKIDKDVEIQHISNDVRHLIRDYVAPFFEKLDEVKLGKEASILFYEFMIQVGVEKQIQFM
RDLALERGDLVKAKNHEQTWQAFVTLLDEYTELMGELDFDLDDFIQIFKTGLEGLTYSKV
PTTLDQLEITSMDFVRAKKSKVTFIIGATDQQLPKKIENKTLLSDEERGFLKEVLPFEKY
LKKDQTKDLAREPFVFYLSLLSATDKLIITYPKSSDNSKELKISPYVTILKQELQLKEIP
KEQGFKWQETPNTTLFSTDDVLLREWIDFKRQLTDEKQATPWIFHQLEKRLLKKYPLKTA
RLLASLAHENIPENLSSVSVETLYGETVYASVSKIENFHKCQYKYFLMYGLGLRERDQFE
LSPAATGDFYHEALDQFFKEIIKGQYILSQMTQEEIQVVTENVLKEVLGQDKFGILNTTN
RMNYIKYQLSKTIERIGWSLKKQSERSNMTVVQTEVLFGQILQDQGLASLDFDLSNRKKL
KVRGKIDRIDKMKVEDDLYLSVVDYKSSKHNFDFVDAYYGLALQMITYLNVALNNAVSLV
GEEAKAAGAFYMHVQNPMIPASEKINEENIEEELLKSYQYNGLLTNEEAVLELLDKTMEP
GVKSLVYPYQQLKKETMKSSQFVTNDELDFLIENNQNRFREAGEAIFEGSTLLNPAYRKQ
KRIACEYCPFRSVCQFDVMLKENNYHRIEELSKEEIMKKDKEVAHDE
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgtacaatttgttattggttctgctagtcaggatcattcaaaagaattagtaaaa
atggcagacgaatggttgcaacaatcaagcgaccatgaagttttttatttagtccctaac
cacgttaaatttgaaacagagattcatgtgttaaaagaattagctgagttacctcgctat
agtaaatgggaaaatatggttagtatgcgtctgcaagtttttagtttttctcgtttagct
tggtattatttacaaaatacagctgaatatcaggagcaacaactatcaacagtttctaag
tttatgattttaaaacaagttttacttgaaaatgcgactaatttagaattgtttcaatat
gaaatcaataagcctggctttgtggagcagttaattgatttatttgatgagcttcaagaa
ggggttattacaccagaagatttagaggaaactttaaatgagctgaagattcaaggaaaa
gtcacggagaattttattaaattaaatgatataaaagctatctatacgtattacagtgaa
cggatttctgagttagatgcttctggtcatgatttattactatctttaggtgattactta
caaaataaaaatttaaaaaatgtaatgtttattgtttcaggattttctaactttacagca
attgaaaaacaattaattgaaagcttaatgaaagcttctggggaatttaaaatatcttta
gttgttgataaagcttataccaatcaagttccagaagctcgggatttattttttaataca
ggccacttatattatgagctttaccaaatagcaaaagaaaataaattacctattttattt
gataaaaaattaacggatgaaacaacgtccatgaccgatttagatatggtttggcaacaa
agtcaaaagttaatgaaaacaagtgacaaagttttaatggataaaagtaatgttccacta
gaagtgtggaatgcagtggatccctataatgagatgctttctgttgctaaagaaataaga
cgcttagtttctatagaaggttatcgttatcaagatattactgtattaacaagagattta
gcttcttatcagcaaattatttctcctatattagttgaaaatgatattcctttttatttt
aatcaagaggaagagatgaaacaccatcctttaatcgaatttattaatgctttatttcaa
atgaaacaacatttttatcagtataaagatgtgcttcgttttttacgctcagaaatattt
tcacctaattctttagaaattgattccctaccagagtgggaaaatcatcgtaaagagcta
agagaagctatagactatacagaaaatgtggttcttgcttatggttatagtggttctgat
tgggtgaagaaaagagattggcgttatgtctactaccagtatgaggatgaggtcgaaggc
gaaaagattgataaggatgtagagattcaacatatatcaaatgatgtgagacatttaatt
cgtgattatgtggcaccattttttgaaaaattagatgaagttaaacttggaaaagaagca
agtattttattttatgaatttatgattcaagtgggtgtggaaaaacaaattcaatttatg
agagacttagctttggaaagaggagacttagttaaagccaaaaatcatgagcaaacgtgg
caagcttttgtcactttgctagatgaatacacagagttaatgggtgaattagactttgat
ttagatgattttattcaaattttcaaaacaggacttgaaggcttaacttatagtaaagtc
ccaacgactcttgaccaattagaaattacttccatggattttgttagagcgaaaaaaagt
aaagtaacttttattattggagcaacagatcaacaattacctaaaaaaatagaaaataaa
acgttacttagcgatgaagaaagaggcttcttaaaagaagtactcccatttgaaaagtac
ttaaaaaaagatcaaacaaaagatttagcaagagaaccatttgttttctatttgtcattg
ctatcagcaactgataagttgattattacctatcccaaaagtagtgataatagcaaggaa
ttaaaaatttctccctatgtcacgattttaaaacaagaattacaacttaaagaaatacca
aaagaacaaggatttaaatggcaagaaacaccaaatacaactcttttctcaacagatgac
gtattacttagggaatggatagactttaaacgccaattaactgatgaaaaacaagcaaca
ccgtggatttttcatcaactagaaaaaagattgctaaaaaaatacccgctaaaaacagct
agattgctagctagtttggctcatgaaaatattccggagaacttaagttcagtttctgtt
gaaactctctacggtgaaacagtctatgcctcggtttctaaaattgagaacttccataaa
tgtcagtacaagtactttttaatgtatggtttaggcttaagagaaagagatcaatttgag
ctatcaccagcagctacaggagatttttatcacgaggctttagatcaatttttcaaagag
attattaagggacaatacattttaagtcaaatgactcaagaagaaatccaagtggttact
gagaatgtcttaaaagaagttttaggacaggataaatttgggattttaaatacgacaaat
cgcatgaattacattaagtatcaactatctaaaactatagaaagaattggttggtcgctt
aaaaaacaaagcgaaagaagtaatatgactgttgttcaaacagaagttttatttggtcaa
attcttcaagaccaaggcctagcaagtctagattttgatttaagcaatcggaagaaatta
aaagttagagggaaaatcgaccgtattgataaaatgaaagttgaagatgatttgtattta
tcagtggttgattataaatcaagtaaacataattttgattttgtagatgcttattatggg
ttagctctacagatgattacttatttgaatgtcgctttaaataatgcggtatctcttgtt
ggagaggaagctaaagcagcaggagccttttacatgcatgtacaaaacccaatgattcca
gcaagtgagaaaattaatgaagaaaacattgaggaagagttactaaagtcttatcagtat
aatggtttacttactaatgaagaagctgtattagagttactagataaaacaatggaacct
ggtgttaaatctttagtttacccttatcaacaactaaaaaaagaaacgatgaaatcatct
caatttgttacaaatgatgaattagatttcttaattgagaacaatcaaaatcgatttaga
gaagcaggagaagctatttttgaaggctctactcttttaaatccagcttacagaaaacaa
aaacgtatagcttgtgagtattgtccttttagaagtgtttgtcagtttgatgtgatgtta
aaagaaaataactaccaccgaattgaagagctatctaaagaagaaattatgaagaaagac
aaggaggtggctcacgatgagtaa
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