Vagococcus fluvialis: K5K99_08835
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Entry
K5K99_08835 CDS
T07851
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vfv
Vagococcus fluvialis
Brite
KEGG Orthology (KO) [BR:
vfv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vfv03009
]
K5K99_08835 (rlmD)
Enzymes [BR:
vfv01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
K5K99_08835 (rlmD)
Ribosome biogenesis [BR:
vfv03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
K5K99_08835 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_15
Methyltransf_25
MTS
N6_N4_Mtase
RrnaAD
TRM5-TYW2_MTfase
PrmA
Methyltransf_11
DOT1
PCMT
TRM
Methyltransf_32
Methyltransf_12
Motif
Other DBs
NCBI-ProteinID:
UDM73048
LinkDB
All DBs
Position
1698352..1699737
Genome browser
AA seq
461 aa
AA seq
DB search
MTKTKKELPVNKNDKYWLTIEDMTHDGRGVGKVDFYPIFIENAIIGEEVEVKILKTTKKF
AYGKVLQWKKKSPNRVEDIDSNLIRTGIAPLAHMTYEAQLLFKQQQVEKAMTRIGGFESI
EVKATKGMETPFKYRNKAQIPVRKINERLELGFFRRNSHDLIPIEDFYIQEEAIDEALIA
IKPILEQFNVKPYDEEKQTGHLRNIVIRKGHYTNELMIVLVTKKKKLFKIGEICKAIVEA
VPNVTSIMQSIHTENNNVILGKEFVRLYGKEYIEDQLLGNTYQISASSFYQINTTQAEVL
YKEAISRAELTKDDVVIDAYCGIGTIGLSLAKDVKKVYGVEIVEEAIEDARKNAEINDID
NVEFEVGKAEVIFDKWLKEEVQPTVIVVDPPRKGLTESFIKASVEMNPEKIVYVSCDPAT
CARDLKLYNELGYTADYVQPVDMFPQTSHVETVVLMSRVDK
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaactaaaaaagaattacctgtaaataaaaacgacaaatattggttaacgatt
gaagacatgacacatgatggacgtggtgttggtaaagttgatttttacccaatttttatt
gaaaatgccattatcggtgaagaagtagaagttaaaattttaaaaacaacgaaaaaattt
gcttatggtaaagttttacaatggaaaaagaaaagtcctaatcgtgtagaagatattgat
tcaaacttaattagaacagggattgccccacttgctcacatgacttatgaggctcaattg
ttatttaaacaacaacaagttgaaaaagctatgacacgtattggtggttttgaaagtatt
gaagttaaagctactaagggaatggaaacaccgttcaaataccgtaacaaagcacaaatc
ccggttcgtaaaatcaatgagcgtttagagttgggcttttttagaagaaatagtcatgat
ttaattccgattgaagatttctatattcaagaagaagcgattgatgaagctttaattgcc
attaaacctattttagaacagtttaatgtgaaaccatatgatgaagaaaaacaaactggt
catctaagaaatattgttattcgtaaaggacattatacaaatgaattaatgattgtttta
gtgactaagaagaaaaaacttttcaaaattggtgaaatttgtaaagcgattgttgaagct
gttccaaatgtgacttcaattatgcaaagtattcacactgagaataacaatgtcatctta
ggtaaagaatttgttagattatatggtaaagagtatattgaagaccaattacttggtaat
acatatcaaatttcagcaagttcattctaccaaattaatacaactcaggcagaagttctt
tacaaagaagcgatttctcgtgctgagctgactaaagatgatgttgtgattgatgcttat
tgtggtatcggaactattggcctatctttagctaaagatgttaaaaaagtttacggtgtt
gaaattgttgaagaagccattgaggatgctagaaaaaatgctgaaatcaatgatattgat
aatgttgaatttgaagttggtaaagcagaagttatctttgataaatggttaaaagaagag
gttcaaccaactgttattgtagttgacccaccaagaaaaggattaacagaaagctttatt
aaagcaagtgttgaaatgaatcctgaaaaaatcgtttatgtatcatgtgatccagcaaca
tgtgctcgtgatttaaaactatacaatgaattaggctatacagctgattacgttcaacca
gtagacatgttcccacaaacatcacacgttgagacggtagtattgatgtcaagggttgat
aagtaa
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