Vagococcus fluvialis: K5K99_09705
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Entry
K5K99_09705 CDS
T07851
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vfv
Vagococcus fluvialis
Brite
KEGG Orthology (KO) [BR:
vfv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vfv03032
]
K5K99_09705 (topA)
03400 DNA repair and recombination proteins [BR:
vfv03400
]
K5K99_09705 (topA)
Enzymes [BR:
vfv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
K5K99_09705 (topA)
DNA replication proteins [BR:
vfv03032
]
Prokaryotic type
DNA Topoisomerases
K5K99_09705 (topA)
DNA repair and recombination proteins [BR:
vfv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
K5K99_09705 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
DUF7078
Toprim_4
DUF2996
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
UDM73203
LinkDB
All DBs
Position
complement(1869997..1872078)
Genome browser
AA seq
693 aa
AA seq
DB search
MSYKYLVIVESPAKAKTIEKYLGKNYKVVASVGHIRDLPKSKMGIDIENNYEPGYINIRG
KGPVIKELKKYAKKADKVYLAADPDREGEAIAWHLAHILDLDLEDNNRVVFNEITKDAVK
AAFKEPRKINVDLVDAQQARRILDRLVGYSISPLLWKKVKKGLSAGRVQSIALKMIVDRE
EEIRNFEPEEYWSITGDFVKGKTKFKANFYGVDGKKLKLNNAEDVKAVTEKLTSRDYDIT
KVTKKERKRNPAVPFTTSSLQQEAARKLNFRTRKTMMIAQQLYEGIKLGKGQGTVGLITY
MRTDSTRLSDTAKNDAFNFITETYGKEYTNGAPKVKKNAQGAQDAHEAIRPSSVLRTPES
IKEFLDKDQFKLYSLIWSRMVASQMAPAILDTMRVDLEQNNVKFVANGSKIKFPGFTKVY
IEGKDDGKEDKENVLPDLTEGEVVKSADIEPKQHFTQPPARYSEATLIKTLEENGVGRPS
TYAPTLETIQRRYYVKLNARRFEPTELGEIVNTLVVEFFPQIVDVNFTAEMEQDLDKIAI
AQENWVDVVDRFYKPFAKELEKAEKEIEKVQLKDEPAGFDCEECGNPMLIKLGKYGKFYA
CSNFPDCRNTKAIVKKIGVTCPTCKQGEVIEKKTKKNRVFFGCERYPECEFTSWDRPIGR
DCPKCSEYLIQKKVRGGQQIICSSCDYKEDVQK
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgagttataaatatctagtaatcgtagaatcccctgcaaaagcgaaaactatcgaaaaa
tatcttgggaaaaattataaagttgtggccagcgtaggtcatataagagacttgcctaaa
agtaaaatgggaattgatattgaaaataattatgagccaggctatatcaatatcagaggt
aaaggcccagttattaaagaattaaaaaaatatgcgaaaaaggcggataaagtttacctt
gcagccgatccggacagggagggggaagccattgcttggcaccttgcccacattttagat
ttagatttagaagacaataaccgcgttgtctttaatgagattacaaaagatgctgtaaaa
gctgcctttaaagaaccacgtaaaattaatgttgatttagttgatgcccaacaagcacgt
cgtattttagaccgcttggtaggctattcaattagtccattactatggaagaaagttaaa
aaagggcttagtgctggccgggttcaatctattgcattaaaaatgattgtagatcgggaa
gaagaaattagaaactttgagccagaagagtactggagcattactggggattttgttaaa
ggtaaaacgaaattcaaagctaacttttacggcgttgatggtaaaaaattaaaattaaac
aatgctgaagatgttaaagctgttactgagaaactaacttcaagagactatgacattact
aaagtaactaaaaaagaacgtaaaagaaatccagctgttccttttacaacaagtagttta
caacaagaggcagctagaaagctaaacttcagaactagaaaaacaatgatgattgctcaa
caactttatgaaggaatcaaacttggaaaaggtcaaggaactgtcggtttaattacttat
atgcgtactgactcaactagactttctgatacagctaaaaatgatgcttttaactttatt
acagaaacttacggcaaagagtacacaaatggcgctccaaaagttaagaaaaacgctcaa
ggagcacaagatgcccatgaggcgattcgtccatcaagtgttttaagaacccctgaatca
attaaagaatttttagacaaagatcaatttaaactatattcacttatttggtcgcgtatg
gtagctagtcaaatggcgccagctattcttgatacaatgcgtgttgatcttgagcaaaat
aacgttaaatttgttgctaatggatcaaaaattaaatttcctggttttactaaagtctat
attgaaggtaaagatgacgggaaagaagacaaagaaaatgtgttgcctgatttaactgaa
ggtgaggttgttaaatctgctgatattgagccaaaacaacattttactcaacctccagca
aggtatagtgaagcaaccttaattaaaacattagaagaaaatggcgtaggtagaccatct
acttatgcaccaaccttagaaaccattcaacgtagatactatgttaaattaaacgctcgt
cgttttgagccaactgaattaggtgagattgttaatacattagttgttgaattcttccca
caaattgttgatgtgaactttacagctgaaatggaacaagatttagataaaattgctatt
gctcaagaaaattgggtagatgtagttgatagattctataagccatttgctaaggaatta
gaaaaagctgaaaaagaaattgaaaaagttcaattaaaggatgaaccagcaggctttgac
tgtgaagaatgtggcaacccaatgctaattaaacttggaaaatacggtaaattctatgct
tgtagtaatttcccagattgtcgtaatacaaaagcaattgttaaaaaaattggcgtgact
tgtccaacgtgtaaacaaggagaagttattgagaagaaaacgaagaaaaatcgtgttttc
tttggttgtgagagataccctgagtgtgaattcacttcatgggatcgcccgatcggccgt
gattgtccgaaatgttctgagtacttaattcagaaaaaagttcgtggtggtcaacaaatt
atttgtagcagctgtgattacaaagaagacgtgcaaaaataa
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